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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56574.1
DDBJ      :             putative cytochrome c component
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  73/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.33.1
:394 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   314->365 1g8kB PDBj 3e-10 47.1 %
:RPS:PDB   39->111 3c8nC PDBj 5e-04 21.9 %
:RPS:PDB   247->379 3cwbE PDBj 1e-16 20.8 %
:RPS:SCOP  245->386 1nykA  b.33.1.1 * 3e-36 31.3 %
:HMM:SCOP  310->392 1jm1A_ b.33.1.1 * 9.7e-26 37.3 %
:RPS:PFM   310->366 PF00355 * Rieske 8e-08 41.1 %
:HMM:PFM   310->369 PF00355 * Rieske 1.5e-15 35.6 59/97  
:HMM:PFM   77->141 PF01957 * NfeD 0.0006 16.1 56/144  
:BLT:SWISS 23->394 QCRA_CORDI e-112 56.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56574.1 GT:GENE BAD56574.1 GT:PRODUCT putative cytochrome c component GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1878299..1879483 GB:FROM 1878299 GB:TO 1879483 GB:DIRECTION + GB:PRODUCT putative cytochrome c component GB:PROTEIN_ID BAD56574.1 LENGTH 394 SQ:AASEQ MSEQERDVSRPDEGPELSKKPVNPPVDPTEDELDAMTRDELVELGTARDGVEVVYRGERFPVPGTRAEKRAERQVTFWFAVSGLAAAALIGVFLFWPWEFKGKNEDGHAAYSLFTPLVGLTFGIAVLVIGIAVVLIRKKFIPAEISIQERHDGPSPEVERRTLAAELQDALDTSTLGRRKMITRTAGAGVGVLGIGALLVFVGGMVKNPWAKREKSPLWVSGWTPDFEGETVYLRRDTGRPEDIVLVRPEDLDAGAMETVFPWKEKWRGDSHATLQSLRGIRNAVMLIRLRTEDAEKAIKRKGQESFNFGDYFAYSKICTHLGCPTSLYEQQTNRILCPCHQSQFSATEWGKPIFGPAARALPQLPITVNSEGFLVANGDFIEPLGPAFWERRS GT:EXON 1|1-394:0| BL:SWS:NREP 1 BL:SWS:REP 23->394|QCRA_CORDI|e-112|56.3|371/406| TM:NTM 3 TM:REGION 75->96| TM:REGION 115->136| TM:REGION 184->206| SEG 123->136|giavlvigiavvli| SEG 186->204|agagvgvlgigallvfvgg| BL:PDB:NREP 1 BL:PDB:REP 314->365|1g8kB|3e-10|47.1|51/133| RP:PDB:NREP 2 RP:PDB:REP 39->111|3c8nC|5e-04|21.9|73/324| RP:PDB:REP 247->379|3cwbE|1e-16|20.8|120/196| RP:PFM:NREP 1 RP:PFM:REP 310->366|PF00355|8e-08|41.1|56/95|Rieske| HM:PFM:NREP 2 HM:PFM:REP 310->369|PF00355|1.5e-15|35.6|59/97|Rieske| HM:PFM:REP 77->141|PF01957|0.0006|16.1|56/144|NfeD| GO:PFM:NREP 3 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00355|IPR017941| GO:PFM GO:0051537|"GO:2 iron, 2 sulfur cluster binding"|PF00355|IPR017941| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00355|IPR017941| RP:SCP:NREP 1 RP:SCP:REP 245->386|1nykA|3e-36|31.3|131/156|b.33.1.1| HM:SCP:REP 310->392|1jm1A_|9.7e-26|37.3|83/202|b.33.1.1|1/1|ISP domain| OP:NHOMO 79 OP:NHOMOORG 77 OP:PATTERN ------------------------1--1-11------------------------------------- --11111111111111111-111111111111111111111122111111111111111111111111111----------------------------------------------------------------------------------------------------------------1---1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------1--------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 239 STR:RPRED 60.7 SQ:SECSTR ##############################TTHHHHHHHHHHHHHHHTTcccEEEEccccEEEEEccccccTTcccEEEEcccHHHHHHHHHHccEEEEEccccHHHHHTT############################################################################################################################ccTTTccccEEccGGGccTTcEEEcccccccEEEEccHHHHHHHHHTTTTcccTTcccccccTTcccccEEEEcTTEEEEccccTTTccccEEcccccccEEETTTTEEEcTTTTccEEEcccccccccccEEEccccccEEEccTTTccccTTcccc# DISOP:02AL 1-28, 147-158, 276-279, 289-304, 393-394| PSIPRED ccHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHccEEEHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccEEEEccccccccccEEEEEcccccccccEEEccccccccccccccccccccccccccHHHHHHHHcccccEEEcccccccccccccccccccccEEEEEEccccccccccccccccccEEEEcccccEEcccccccEEEccccccccEEEEEEEcccEEEEEEEEEEccccccccccc //