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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56591.1
DDBJ      :             putative ABC transporter ATP-binding protein
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  907/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:561 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   30->259 1l2tB PDBj 1e-28 33.9 %
:BLT:PDB   318->551 2yyzA PDBj 1e-30 34.7 %
:RPS:PDB   24->80 2c9gA PDBj 5e-11 7.5 %
:RPS:PDB   54->184 1dw9A PDBj 2e-17 14.6 %
:RPS:PDB   176->555 1d1cA PDBj 3e-51 9.4 %
:RPS:SCOP  30->277 1b0uA  c.37.1.12 * 8e-47 29.5 %
:RPS:SCOP  306->551 1b0uA  c.37.1.12 * 5e-50 28.2 %
:HMM:SCOP  30->281 1g2912 c.37.1.12 * 9.7e-64 45.8 %
:HMM:SCOP  301->547 1g2912 c.37.1.12 * 1.5e-66 41.4 %
:RPS:PFM   113->209 PF00005 * ABC_tran 6e-15 48.9 %
:RPS:PFM   442->475 PF00005 * ABC_tran 5e-10 73.5 %
:RPS:PFM   526->551 PF08352 * oligo_HPY 3e-04 57.7 %
:HMM:PFM   74->209 PF00005 * ABC_tran 4.6e-21 36.4 118/118  
:HMM:PFM   347->474 PF00005 * ABC_tran 2.4e-20 34.2 111/118  
:HMM:PFM   260->295 PF08352 * oligo_HPY 4e-09 44.1 34/64  
:HMM:PFM   526->554 PF08352 * oligo_HPY 1.4e-08 44.8 29/64  
:HMM:PFM   62->82 PF05729 * NACHT 0.00022 47.6 21/166  
:BLT:SWISS 18->560 GSIA_SALCH e-104 42.8 %
:PROS 181->195|PS00211|ABC_TRANSPORTER_1
:PROS 447->461|PS00211|ABC_TRANSPORTER_1
:REPEAT 2|40->277|313->543
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56591.1 GT:GENE BAD56591.1 GT:PRODUCT putative ABC transporter ATP-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1897925..1899610) GB:FROM 1897925 GB:TO 1899610 GB:DIRECTION - GB:PRODUCT putative ABC transporter ATP-binding protein GB:PROTEIN_ID BAD56591.1 LENGTH 561 SQ:AASEQ MSGSAAGGGSAASPHRPPHSGGIGHSMSELLRIDQLRVTYRSGGGAVTALAGASLTVAPGEVVALVGESGSGKSTLAHAVIGLLPRAARIGGGHIEFAGLRVDTADERTLRRLRGARIGFVPQDPGLSLNPVRRVGDQIAEALRVHGLADPRTARARVLDLLDEVGLERSQRWERRYPHELSGGQRQRVLIAIALACGPELIIADEPTSALDATVARRVLDRLAERIGARGTAVLLITHDLAMAAERADRLVVLVDGEIVESGRPADLLTAPRHPYTARLLAASPSLRSAPPRPARPATGAPLLVLREVHKRYRTPAGTVTAVDGVGFELRRGETLALVGESGSGKSTTARIALRLTGADRGSVTFDGHDITAVRGARLRALRRRFQVVYQNPYGSLDPRQSLATIIAEPLRAFGIGDRAARRARVRELLGQVALPEHYAVRRPAELSGGQRQRVAIARALALHPDLLVLDEPVSALDASVQAQILDLLERLQSELDVSYLFISHDLAVVRRISDHVAVMRHGKVVESGPTAAIFDAPRHEYTAELLAAIPHPQLSRKGPS GT:EXON 1|1-561:0| BL:SWS:NREP 1 BL:SWS:REP 18->560|GSIA_SALCH|e-104|42.8|538/623| PROS 181->195|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 447->461|PS00211|ABC_TRANSPORTER_1|PDOC00185| NREPEAT 1 REPEAT 2|40->277|313->543| SEG 2->13|sgsaagggsaas| SEG 278->304|arllaaspslrsapprparpatgapll| SEG 375->385|rgarlralrrr| SEG 419->427|raarrarvr| BL:PDB:NREP 2 BL:PDB:REP 30->259|1l2tB|1e-28|33.9|221/232| BL:PDB:REP 318->551|2yyzA|1e-30|34.7|225/358| RP:PDB:NREP 3 RP:PDB:REP 24->80|2c9gA|5e-11|7.5|53/447| RP:PDB:REP 54->184|1dw9A|2e-17|14.6|123/152| RP:PDB:REP 176->555|1d1cA|3e-51|9.4|372/744| RP:PFM:NREP 3 RP:PFM:REP 113->209|PF00005|6e-15|48.9|92/123|ABC_tran| RP:PFM:REP 442->475|PF00005|5e-10|73.5|34/123|ABC_tran| RP:PFM:REP 526->551|PF08352|3e-04|57.7|26/64|oligo_HPY| HM:PFM:NREP 5 HM:PFM:REP 74->209|PF00005|4.6e-21|36.4|118/118|ABC_tran| HM:PFM:REP 347->474|PF00005|2.4e-20|34.2|111/118|ABC_tran| HM:PFM:REP 260->295|PF08352|4e-09|44.1|34/64|oligo_HPY| HM:PFM:REP 526->554|PF08352|1.4e-08|44.8|29/64|oligo_HPY| HM:PFM:REP 62->82|PF05729|0.00022|47.6|21/166|NACHT| GO:PFM:NREP 7 GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| GO:PFM GO:0000166|"GO:nucleotide binding"|PF08352|IPR013563| GO:PFM GO:0005524|"GO:ATP binding"|PF08352|IPR013563| GO:PFM GO:0015833|"GO:peptide transport"|PF08352|IPR013563| RP:SCP:NREP 2 RP:SCP:REP 30->277|1b0uA|8e-47|29.5|241/258|c.37.1.12| RP:SCP:REP 306->551|1b0uA|5e-50|28.2|241/258|c.37.1.12| HM:SCP:REP 30->281|1g2912|9.7e-64|45.8|238/240|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 301->547|1g2912|1.5e-66|41.4|239/240|c.37.1.12|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 49625 OP:NHOMOORG 1172 OP:PATTERN YYHBOMLHVVUTWQWNmJNNONMXzRVnpclZHDECDEFEGEDTUTVnKR**iASYQTRKQKJFb199 WZqS*dgdppsVfRdTTNM-MnAAa*NNNNNQzssuu***U*d****k*ujT***TUnEE***m*u****icZZZ*ddYO*gpABDABOOPG4IEHH--DFQHLKXKUPN8AAAAAABCCAAAAGVQJUYONWTUSntt**LKJzbvlnsihjhiXaQKTMPKbdal***bGPEMIHGQFLGFncdQPoj8Ybt************************gmz**nowyxsvw**VgghgheefggggfeZXVXZ*cdc**dOZTb**OO**aTNXlgdhirprumirpppkrnnljmpkmncdbabcddfedbbwmjdcblkmic*w*********b*dn*uuOaZW*jgrc*ekRL**siXbfkQadZicKXafLdaVVPMNLKMeY***aXt****************-tx*pm*q***VB**************LML**********VUVVVVVV*ekJTkb*66657444565646AB66854655786A6GFHJFF************************n********CO**q*syms******cpoOZKVnXJJJIJHJTQRfska**PfXwpXouebnHdbaWVciWdbaabx*X*IKKPDMMLNLHCBBAABBABHRFHHPOsrrPyQdMWOyUXbcYOTgVTTUUWcWWda5-DJYTN31-444****d**z*******yy-*zz**z*******yzyyyw*****lljuvqssttutussusst*unruvuyV2************33KIBDABCLMLLSI*q*abYcYaLQTQQVQUgOQSSQHPINVve********y****k***CFFCEEFEFKeqp*uuvvu*****RSUQQQQNOOEDDD66PTQQIJJJ88686888*CUDDEC9-DBEBIIBDEEAFJCEF99AaekSVp*oqlEfK 1311SPL-jP7AQVTIFIFGNPKXGaMFFAECENMKBHDFDFFACBIFKRRRbPHJNFFFCF87866A25547965723856655946-RV8FIMC889FA6FJKD4RncxPVScbYHEBAIOGch9iA**Z1ZMeELEAYCFdQCIGB9TA7*EQHKoIi*FsPRCwff*XabQHNIE*DHEGNulj*FvzNM*grsU ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-28, 552-561| PSIPRED ccccccccccccccccccccccccccccccEEEEccEEEEEccccEEEEEEcccEEEccccEEEEEccccccHHHHHHHHHHHccccccccccEEEEccEEHHcccHHHHHHHHHHccEEEEccHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHHHccEEEEEccHHHHHHccccHHHHHHHHHcccccHHHHHccHHHHHcccEEEEcccEEccccccEEEEEccccEEEccccEEEEEEcccccHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHccEEEcccHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHHHccEEEEEccHHHHHHccccHHHHHHHHHcccccccccccc //