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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56594.1
DDBJ      :             putative transporter peptide-binding protein
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  607/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:518 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   33->502 3dp8B PDBj 3e-32 26.1 %
:RPS:PDB   24->511 3dp8B PDBj 5e-77 22.9 %
:RPS:SCOP  24->514 1xocA1  c.94.1.1 * 3e-77 18.2 %
:HMM:SCOP  17->515 1vr5A1 c.94.1.1 * 2.4e-107 33.2 %
:RPS:PFM   66->414 PF00496 * SBP_bac_5 5e-37 34.5 %
:HMM:PFM   65->424 PF00496 * SBP_bac_5 1.2e-74 32.0 350/372  
:BLT:SWISS 33->502 NIKA_ECOLI 1e-30 26.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56594.1 GT:GENE BAD56594.1 GT:PRODUCT putative transporter peptide-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1901485..1903041) GB:FROM 1901485 GB:TO 1903041 GB:DIRECTION - GB:PRODUCT putative transporter peptide-binding protein GB:PROTEIN_ID BAD56594.1 LENGTH 518 SQ:AASEQ MTGCGGGTAAPGADAGPPQPGGTLRYGLSQAPTCADPAQAGTNQTLYVTRQVVDSLTDQDPRTGELRPWLARSWEVSPDATTFTFHLADGVTFSDGTPLTAESVRNTFDAVARLGTVKSPLGASYLSEYTGTTVVDRLTAQVTFQRPNAQFLQASSTTQLGILADASTAATAEQRCAGVVGSGPFTYAEWRQDQSATLVKRAGYHWGSAVFGHSGEAYLDRLEFTVVPESGVRTGSLASGQLDAVSDALPQDLPQIEAAGGQVLTASNPGVPFGLQPNVSRGPLRDPAVRQALLTALDRRELVDTVLGPQFHAATGPLAASTPGYRDLSARLTHDPARSGEILDRAGWVPGGDGIRAKDGQRLSFAVLFSGAFAGNQAVLELSQQQLRRVGVELRLEPAATPEYTARQNAKDYDALYYNTTRADGDILRNVFGLTGRNLNLRAAIPALDEALDGQLRTADPAARAALIGTAQEQVLDAGLWIPTIELSQAIGVGPATHGVAFDASARLQFFDAWLGGR GT:EXON 1|1-518:0| BL:SWS:NREP 1 BL:SWS:REP 33->502|NIKA_ECOLI|1e-30|26.1|459/524| SEG 2->23|tgcgggtaapgadagppqpggt| BL:PDB:NREP 1 BL:PDB:REP 33->502|3dp8B|3e-32|26.1|459/497| RP:PDB:NREP 1 RP:PDB:REP 24->511|3dp8B|5e-77|22.9|475/497| RP:PFM:NREP 1 RP:PFM:REP 66->414|PF00496|5e-37|34.5|328/366|SBP_bac_5| HM:PFM:NREP 1 HM:PFM:REP 65->424|PF00496|1.2e-74|32.0|350/372|SBP_bac_5| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF00496|IPR000914| GO:PFM GO:0006810|"GO:transport"|PF00496|IPR000914| RP:SCP:NREP 1 RP:SCP:REP 24->514|1xocA1|3e-77|18.2|479/504|c.94.1.1| HM:SCP:REP 17->515|1vr5A1|2.4e-107|33.2|485/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 2707 OP:NHOMOORG 640 OP:PATTERN 221-1-----------1-1111-1-1111-3112---------1-2-22-HA5-211---1---2--- 111-4452444-11-2211-11111811111-34442F59193J6B83232-684214--331265935813111544323-311--1-----------------1---1----------1111-222222222424554133298---133111111----111114-43------------A441222-412555555552445545A9555-5441-3882-------S8-11111111211112-112--------------------------1222-111--------------11111111111112----------D2412221222122122211112--31A--12988321-51-235-16631-----121111-HIV--3841B-6769789588F-23D2-A3HLN1-gMMQBAAKIIMML5-1-6BB87886BC--------22211168--------------------------------1--CDBBE68888653333449733332365E6487--335-154552C5EK13--31242----------11-13511115223212111111121-----25111111-1111111-1111111-1--111642-12-1111111111121111-121111---2--1------79KD4A87776765657-7776766676767677775CDBDA4366535464666556556A55655563-533343333343---1-----------425666-122111-5113------1113525555474A47665-A9A----------33-33333314333--1--------------B111111555252121---------------------------121113832214- --------------------------------------------------------------------------------------------------------------------------------------------------------------1----3---------------------2------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 493 STR:RPRED 95.2 SQ:SECSTR #######################EEEEEccccccccTTcccTTccHHHHHHHccccEEEcTTTccEEEccEEEEEEcTTccEEEEEEccccccTTcccccHHHHHHHHHHHHTTGGHHGGTTcHHHHHEEEEEEccccEEEEEEccccTTHHHHHTcccccccGGGccccccTTccccccccccEEEEEEETTTEEEEEEcTTccccGTTcGGHccccccEEEEEEcccHHHHHHHHHTTcccETTcccHHHHHHHHTcTTcEEEEccccEEEEEEEcTTcTTTTcHHHHHHHHHHccHHHHHHTTTccccccccccccTTcTTcccTcccccccHHHHHHHHHHTTccccTccccEETTEEcEEEEEEETTcHHHHHHHHHHHHHHHTTTcEEEEEEEcHHHHHHHHHHTcccEEEEEcccTTTTGGGccccHHHHHTTTcTTHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHTTcEEEEEEEcEEEEEcGGGccccccccTTcccGTcEEH## DISOP:02AL 5-21| PSIPRED cEEcccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHEEEcccccEEcccEEEEEEEccccEEEEEEEccccEEcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHcEEEEEccEEEEEEEccccHHHHHHHHccccccccHHHHccccccccccccccccEEEEEEEcccEEEEEEcccccccccccccccccEEEEEEEEEEccHHHHHHHHHcccEEEEEcccHHHHHHHHHcccEEEEEEcccEEEEEEEcccccccccHHHHHHHHHHccHHHHHHHHHccccEEEcccccccccccccccccccccHHHHHHHHHHccccccccEEEccccEEEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHccccEEEEEccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEcccccEEEcccccccEEEEEEEcc //