[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56606.1
DDBJ      :             putative penicillin-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  870/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
d.175.1e.3.1
:629 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   191->616 3eqvA PDBj 2e-52 37.1 %
:RPS:PDB   67->619 3dwkB PDBj 3e-64 15.9 %
:RPS:SCOP  71->256 1rp5A3  d.175.1.1 * 2e-31 27.5 %
:RPS:SCOP  261->617 1k25A4  e.3.1.1 * 2e-73 29.7 %
:HMM:SCOP  73->260 1k25A3 d.175.1.1 * 6e-32 34.4 %
:HMM:SCOP  261->612 1qmeA4 e.3.1.1 * 2.6e-95 38.8 %
:RPS:PFM   80->264 PF03717 * PBP_dimer 4e-09 30.4 %
:RPS:PFM   286->605 PF00905 * Transpeptidase 2e-32 41.5 %
:HMM:PFM   287->603 PF00905 * Transpeptidase 4e-89 39.5 299/304  
:HMM:PFM   78->243 PF03717 * PBP_dimer 7.9e-27 32.5 151/177  
:BLT:SWISS 80->616 PBP2_NEIMB 4e-62 35.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56606.1 GT:GENE BAD56606.1 GT:PRODUCT putative penicillin-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1913397..1915286 GB:FROM 1913397 GB:TO 1915286 GB:DIRECTION + GB:PRODUCT putative penicillin-binding protein GB:PROTEIN_ID BAD56606.1 LENGTH 629 SQ:AASEQ MTQARPAPPRRRGPSAPGPAGARAAAADQPLRLRLGVGRIVMLVALAVVALQLLWVQSISAPGLSAQAASQRTTRLVDEATRGPITDRNGKSLAFTVSAKALTFQPVQVRKNLAEAREKNDKAPDPEQRLRDIAATIHDKLGAQAPKESELLDKLTSDEPFVYLARSVDPRIATEITVQFPEVGAERQDMREYPGGSLAANIIGATGWDGHGLIGLESSLDSVLAGTDGSHTYDRGSDGAVIPGSWRDKQPAVDGNGVELTLDSDLQYYVQQQVQQARELSGAEGASAVVLDAKTGQVLAMANDNTFNPALGPQSWGSANTNNPSVSDPFEPGSVNKIVTAAAAIEYGLTNPDEVHQVPGSIRMAGVTVSDAWGHDVAPYTTTGIFGKSSNVGTLMLAQRIGEDRFADMLHRFGLGQRTGVGLPGETAGQVPARDQWSGGTFANLPIGQGLSMSTLQMTGMYQAIANDGVRIPPRIVKATVAPDGTRTEEPQPEGVRVVSEQTARTLRTMFQSVVQRDPMDADQNGTGAPAAVEGYQIAGKTGTAQKIDPRCKCYSSSSYWITFAGMAPAGDPRYVIGLMLDNPVRSSDGSGGQSAAPLFHNIASWALQRDRIPPSTEPARKFVLQAGA GT:EXON 1|1-629:0| BL:SWS:NREP 1 BL:SWS:REP 80->616|PBP2_NEIMB|4e-62|35.2|492/581| TM:NTM 1 TM:REGION 35->57| SEG 4->27|arpapprrrgpsapgpagaraaaa| SEG 41->56|vmlvalavvalqllwv| SEG 267->276|qyyvqqqvqq| BL:PDB:NREP 1 BL:PDB:REP 191->616|3eqvA|2e-52|37.1|391/442| RP:PDB:NREP 1 RP:PDB:REP 67->619|3dwkB|3e-64|15.9|511/621| RP:PFM:NREP 2 RP:PFM:REP 80->264|PF03717|4e-09|30.4|171/188|PBP_dimer| RP:PFM:REP 286->605|PF00905|2e-32|41.5|287/289|Transpeptidase| HM:PFM:NREP 2 HM:PFM:REP 287->603|PF00905|4e-89|39.5|299/304|Transpeptidase| HM:PFM:REP 78->243|PF03717|7.9e-27|32.5|151/177|PBP_dimer| GO:PFM:NREP 3 GO:PFM GO:0008658|"GO:penicillin binding"|PF03717|IPR005311| GO:PFM GO:0008658|"GO:penicillin binding"|PF00905|IPR001460| GO:PFM GO:0009273|"GO:peptidoglycan-based cell wall biogenesis"|PF00905|IPR001460| RP:SCP:NREP 2 RP:SCP:REP 71->256|1rp5A3|2e-31|27.5|178/200|d.175.1.1| RP:SCP:REP 261->617|1k25A4|2e-73|29.7|317/326|e.3.1.1| HM:SCP:REP 73->260|1k25A3|6e-32|34.4|180/197|d.175.1.1|1/1|Penicillin binding protein dimerisation domain| HM:SCP:REP 261->612|1qmeA4|2.6e-95|38.8|348/0|e.3.1.1|1/1|beta-lactamase/transpeptidase-like| OP:NHOMO 2026 OP:NHOMOORG 876 OP:PATTERN -------------------------------------------------------------------- 3333232222233322222-21332222222223334344234322222222232222222222322456222222223333322112111222112--121112222221111111111111112222222222233343---342322222222222233221222233232221222212222112223446686889859889A845665689C6544432444444631222222222222221112132213312123332233222223222111222221122222222222111111111111121122211112446533333334344333255533411433135556632123555222224-322211111111211111222111111111111-111111122121233322122222112222233233222222222224222222222--------222222222222222212123222222222333333344443333444423333343522222222222223222222223221111111222322222212323322222232223223333324221222222222212111111122212442222122222222222212222222222221-2122211-11142223332222222222-22322222222222222224442322233333333333333334222222222322222222222222222222343312222222222222222222222222222222333323322222123331111111112232322222323322322222222222221222222222222222221--------------------------2121222222232 -------------1----------------------------------------------------------------------------------------------1---------------------------------------------------------------------------11--1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 566 STR:RPRED 90.0 SQ:SECSTR ########################################################TTTccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccTTcccHHHHHHHHTccccTTccHHHHHHHHHTTccHGGGcHHHHcTTTcHHHHHHHHHHHHHHHHTTcccHHHHHHHTTcccGGGcccccTTTTccccccccGGGHHHHHHHHHHHTTcGGGcccHHcHHHHTTcccEEEEcccHHHHHHHHHHHHHcccccTTEEEEEEEEETTTccEEEEEccTTccTccTTcTccTTTTcccTTTccEEcGGGGHHHHTHHHHHHccccTTcEEEccccccccccccccTTcccccEEEHHHHHHTTcHHHHHHHHHHHHHHccTTHHHHHHHHTTccccccccHHHHTTccccccccccTTHTTcTTcEEcHHHHHHHHHHHTTTcEEEccccEEEEEcccccEEEccccEEEEcccHHHHHHHHHHHHTTccTccccHHcTTcTTTTcccccccEEEEEEEEccTHTHHHHTTccTTEEEEEEEEEEcccEEEEEEEEEccccGGGHHHTHHHHHHHHHHHHHcccccccccccTccc####### DISOP:02AL 1-32, 621-622, 627-629| PSIPRED ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccEEEEEEEcccccEEEEccccEEEEEEEEEEEEEEHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccEEEEEEccccccccccHHHHccEEEEccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHccccccccEEEcccEEEcccEEEEEccccccccEEHHHHHHHHccHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHcccEEEccEEEEEEEcccccEEEcccccccccccHHHHHHHHHHHHHHHcccccccccccccEEccccccEEEEEEccEEcccccccccccccEEEEEEEEEcccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccc //