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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56625.1
DDBJ      :             putative DNA polymerase IV family protein
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  716/915 : Eukaryota  167/199 : Viruses  0/175   --->[See Alignment]
d.240.1e.8.1
:463 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   25->311 3gqcC PDBj 1e-29 35.7 %
:RPS:PDB   25->363 3bq0A PDBj 3e-59 21.6 %
:RPS:SCOP  22->254 1t94A2  e.8.1.7 * 1e-48 31.6 %
:RPS:SCOP  265->322 1unnC  d.240.1.1 * 2e-08 20.7 %
:HMM:SCOP  23->258 1k1sA2 e.8.1.7 * 1.8e-72 46.8 %
:HMM:SCOP  261->361 1t94A1 d.240.1.1 * 2.3e-19 35.0 %
:RPS:PFM   28->175 PF00817 * IMS 5e-20 40.4 %
:RPS:PFM   239->322 PF11799 * IMS_C 2e-13 45.2 %
:HMM:PFM   28->175 PF00817 * IMS 1.7e-38 39.5 147/150  
:HMM:PFM   234->342 PF11799 * IMS_C 7.1e-19 33.9 109/135  
:HMM:PFM   188->219 PF11798 * IMS_HHH 3e-09 37.5 32/33  
:HMM:PFM   407->435 PF12073 * DUF3553 2.9e-05 55.2 29/52  
:BLT:SWISS 23->462 DPO41_MYCTU e-135 60.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56625.1 GT:GENE BAD56625.1 GT:PRODUCT putative DNA polymerase IV family protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1937241..1938632 GB:FROM 1937241 GB:TO 1938632 GB:DIRECTION + GB:PRODUCT putative DNA polymerase IV family protein GB:PROTEIN_ID BAD56625.1 LENGTH 463 SQ:AASEQ MDRRRFRSVRTERAGDTEHTARRWVLHIDMDAFFASVEQLTRPTLRGRPVLVGGTGARGVVAGASYEARVYGARSAMPMHQAKRLVGVSAVVVPPRGAVYAEMSGRVFEALRSRIPVLETLSFDEAFGEPAELAGASVARVHEFCAELRALVRERTGLVASVGAGTGKQLAKIASGLAKPDGIRVVSPAEQQRLLAALPVRTLWGIGPVAEGRLRTLGIETVGAFAALPESEAVSLLGGSIGAALHRLARGIDDRPVTERAEAKQISAENTYETDIVTMAALRQAIDAMAAAAHRRLGNDGRAARTVVLKLKRSDMSIVTRSSTLPYATTDLAALTAAAQRSAIDPVELGPIRLVGVGYAGLSAVRQESLFPELDRAPVDEDAAVEPAEPAAPAPVADPAAVRIWYPGMDVAHPEYGHGWVQGAGHGVVTVRFETSSTGPGPARTFSADDISLSRADPLGSLA GT:EXON 1|1-463:0| BL:SWS:NREP 1 BL:SWS:REP 23->462|DPO41_MYCTU|e-135|60.4|437/468| SEG 52->64|vggtgargvvaga| SEG 280->293|aalrqaidamaaaa| SEG 324->339|tlpyattdlaaltaaa| SEG 377->402|apvdedaavepaepaapapvadpaav| BL:PDB:NREP 1 BL:PDB:REP 25->311|3gqcC|1e-29|35.7|286/423| RP:PDB:NREP 1 RP:PDB:REP 25->363|3bq0A|3e-59|21.6|334/341| RP:PFM:NREP 2 RP:PFM:REP 28->175|PF00817|5e-20|40.4|146/148|IMS| RP:PFM:REP 239->322|PF11799|2e-13|45.2|84/123|IMS_C| HM:PFM:NREP 4 HM:PFM:REP 28->175|PF00817|1.7e-38|39.5|147/150|IMS| HM:PFM:REP 234->342|PF11799|7.1e-19|33.9|109/135|IMS_C| HM:PFM:REP 188->219|PF11798|3e-09|37.5|32/33|IMS_HHH| HM:PFM:REP 407->435|PF12073|2.9e-05|55.2|29/52|DUF3553| GO:PFM:NREP 3 GO:PFM GO:0003684|"GO:damaged DNA binding"|PF00817|IPR001126| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00817|IPR001126| GO:PFM GO:0006281|"GO:DNA repair"|PF00817|IPR001126| RP:SCP:NREP 2 RP:SCP:REP 22->254|1t94A2|1e-48|31.6|228/308|e.8.1.7| RP:SCP:REP 265->322|1unnC|2e-08|20.7|58/111|d.240.1.1| HM:SCP:REP 23->258|1k1sA2|1.8e-72|46.8|235/0|e.8.1.7|1/1|DNA/RNA polymerases| HM:SCP:REP 261->361|1t94A1|2.3e-19|35.0|100/0|d.240.1.1|1/1|Lesion bypass DNA polymerase (Y-family), little finger domain| OP:NHOMO 1542 OP:NHOMOORG 911 OP:PATTERN ------1111111111--------11111111-----------1--11-2122--------1----11 211-211111111123322-23--242222223333323311-123121111243111--1131112221111111111123------2211-111---21512233222--------------2---111111-2-----111--4--------1111-111-1---1--111111111111--------2-21111111111111112211221111-1112211111122122222222222222111121111111111111--1111111-11111111111111111111111111111111111111111111111121111111111-1-21111111211211-111321-12121111111111-13111-----212232111121111111111112-24123212231-1222221222241111111111111111111111121121211-----------------------------11111-111111111111111111211111111111111-111112111111211111-11411111111112121111211222122222-212112113112111221--1----------------1-11122311121212111334213331221211111----121------23111322222222222-22242222222222222225321111222121312314333232-122221--211111111211---11-1114332-2122111111-----11112112111-111-112113121113211231-1111-1-1212211121211212112111121------2-11--11--------1-1----1-1111111---11111-111-1--------211 ----112-549---1222222222222222222222221212211122222222-22222221------1---1------1--11-22-23222222222-11221-121533126B2333333AB273Ab5-66732234234444122421A132431-313321411913631112E3333323532442222121 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 350 STR:RPRED 75.6 SQ:SECSTR ####################cEEEEEEEEETTHHHHHHHHHcGGGTTccEEEEccccccEEEEEcHHHHHTTccTTccHHHHHHHcTcTcEEEEccHHHHHHHHHHHHHHHHTTccEEEEEETTEEEEEcTTTTTTcHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHTTccccEEEccGGGHHHHHHHcccTTcTTccHHHHHHHTTTTcccGGGGGGccHHHHHHHHcHHHHHHHHHHHTTTccccccccEEcccEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHTTTccEEEEEEEEEEETTccEEEEEEccccccHHHHHHHHHHHHHHHTTcccccEEEEEEEEEEEEHHTTEEE############################################################################################# DISOP:02AL 1-6, 8-18, 371-399, 435-439| PSIPRED ccHHHHHHHHHHcccccccccccEEEEEEccccEEHHHHHHcccccccEEEEEccccccEEEEccHHHHHccccccccHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHcccccEEEEcHHHHHHHHHHccHHHHHcccHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHcccHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccEEEEccccccccccccccccccccEEccccccccccccccccccc //