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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56633.1
DDBJ      :             putative RNA pseudouridine synthase
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  903/915 : Eukaryota  136/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:308 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->306 2istA PDBj 7e-33 35.1 %
:RPS:PDB   14->299 3dh3C PDBj 5e-31 14.4 %
:RPS:SCOP  10->103 1dm9A  d.66.1.3 * 8e-09 16.7 %
:RPS:SCOP  84->308 1v9kA  d.265.1.3 * 2e-55 35.8 %
:HMM:SCOP  15->71 1vioA2 d.66.1.5 * 4.9e-05 29.8 %
:HMM:SCOP  73->306 1przA_ d.265.1.3 * 4.9e-65 40.0 %
:RPS:PFM   91->244 PF00849 * PseudoU_synth_2 4e-22 41.8 %
:HMM:PFM   90->244 PF00849 * PseudoU_synth_2 9.8e-34 34.2 149/164  
:HMM:PFM   264->306 PF11932 * DUF3450 0.00045 30.2 43/252  
:BLT:SWISS 5->306 Y1567_MYCBO e-113 65.9 %
:PROS 136->150|PS01129|PSI_RLU

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56633.1 GT:GENE BAD56633.1 GT:PRODUCT putative RNA pseudouridine synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1948772..1949698) GB:FROM 1948772 GB:TO 1949698 GB:DIRECTION - GB:PRODUCT putative RNA pseudouridine synthase GB:PROTEIN_ID BAD56633.1 LENGTH 308 SQ:AASEQ MRETRAMPVPDGLDGMRVDAGLSRLLGLSRTAVAALTAEGSVQLDGVPAGKSDRLTAGAWLEVEFPEPKRELTVEAAPVEGMKILYADDDIVAVDKPVGVAAHTGVGWSGPTVVGGLAAAGYRISTSGAHERQGIVHRLDVGTSGVMVVAQSEHAYTVLKRAFKQRTVSKRYHALVQGHPDPSSGTIDAPIGRARGNDWKFAVTADGRPSVTHYDTIEAFQAASLLDIHLETGRTHQIRVHFSAIRHPCCGDLTYGADPRLAERLGLQRQWLHARTLGFHHPADGRWLEITSEYPDDLRHALDVLRDA GT:EXON 1|1-308:0| BL:SWS:NREP 1 BL:SWS:REP 5->306|Y1567_MYCBO|e-113|65.9|302/308| PROS 136->150|PS01129|PSI_RLU|PDOC00869| BL:PDB:NREP 1 BL:PDB:REP 15->306|2istA|7e-33|35.1|279/321| RP:PDB:NREP 1 RP:PDB:REP 14->299|3dh3C|5e-31|14.4|236/239| RP:PFM:NREP 1 RP:PFM:REP 91->244|PF00849|4e-22|41.8|146/149|PseudoU_synth_2| HM:PFM:NREP 2 HM:PFM:REP 90->244|PF00849|9.8e-34|34.2|149/164|PseudoU_synth_2| HM:PFM:REP 264->306|PF11932|0.00045|30.2|43/252|DUF3450| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 10->103|1dm9A|8e-09|16.7|90/104|d.66.1.3| RP:SCP:REP 84->308|1v9kA|2e-55|35.8|218/227|d.265.1.3| HM:SCP:REP 15->71|1vioA2|4.9e-05|29.8|57/58|d.66.1.5|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 73->306|1przA_|4.9e-65|40.0|230/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 2853 OP:NHOMOORG 1044 OP:PATTERN --------------------------------------11111------------------------- 2121121222231211111-11111211111112222112121111221111111211111111111211111111112111111222444414-311122223233424-2222222-211114111111111112221211131223233311222212223112222113111113111133311221433-3333333333333322333333333333223333334523333333333333333333-34344343334444444443333333333333333333333333333333333333333334222333332333333333333343223333334332332133141121212223132214333322222333333333333322222222223-3233333322322332222222223344333333333333333333333333342222222222211222222222222221221333332222222232222222222222222222222222222243434333332333322245233333322225471324371223221133433433477779624333232222223333333334333322665544647735888879966689-988892-3233322122244444554444444444-44444444444444444445554444544444444444444445444444431544444444444222422222222233625555455454554334444344434436333333333-33333332222222226777566666666664433333333222222433311112223222222211111-11111221111122111122222222222242 ----113-2121222-1---111-1---------------------1--1--1---------111212112211122113-111111--12111-1--11-113--12D16331112-22213-331214A3-323121-42332131-2332323222-113333-4111-1111333F767232345-6485521-4 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 308 STR:RPRED 100.0 SQ:SECSTR HccccTTTHHHHHccEEHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEcTTccEEETTEEEccccGGGccEEEEEEcTTcccccccccTTcHHHHHTccccTTcHHHHHTcHHccHHHHHTcccccEEcccccTTcEEEEEEEccTHHHHHHHcHcGGGcccEEEEEEEcccccHHHHHHHHTccccccccccccccccccccccEEEEccEEccccEEEEEEccccTTHHHHHHHHTTccEEEEEEEEEEEEEEEEEEETTEEcTTccTTcEEEccHHHHHHHHHTccccccccHTccTT DISOP:02AL 1-3| PSIPRED cccEEEEEEcccccccHHHHHHHHHccccHHHHHHHHHcccEEEccEEEcccccccccEEEEEccccccccccccccccccEEEEEEccEEEEEEccccEEEEccccccccHHHHHHHHHHHHHHcccccccEEEEEEccccccEEEEEEccHHHHHHHHHHHHcccEEEEEEEEEEEEEccccEEEEEcccccccccEEEEEccccccccccEEEEEEcccEEEEEEEEcccccHHHHHHHHHccccEEcccccccccccccccccccEEEEEEEEEEEccccccEEEEEccccHHHHHHHHHHHcc //