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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56639.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  367/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:544 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   45->461 PF00474 * SSF 2e-24 28.2 %
:HMM:PFM   45->461 PF00474 * SSF 1.7e-97 33.5 403/406  
:BLT:SWISS 35->540 YWCA_BACSU 3e-81 45.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56639.1 GT:GENE BAD56639.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1954838..1956472) GB:FROM 1954838 GB:TO 1956472 GB:DIRECTION - GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56639.1 LENGTH 544 SQ:AASEQ MTTSLLAAGTVGNPAANIAIFALFVVVTMVVVIRASRNNATASDYFTGGRGFSGPQNGIAIAGDYLSAASFLGIAGAIAVYGYDGFLYSIGFLVAWLVALLLVAEMLRNTGKFTMADVLSFRLRERPVRTAAALSTLTVSLFYLLAQMAGAGGLVALLLDIDSRAGQSLVIAVVGVLMIVYVLVGGMKGTTWVQIIKAVLLIAGAAFMTVLVLAKFGFNLSEILGSAQQMVSGSANDAVASRDVLAPGAQYGANETSKLNFLSLGLALVLGTAGLPHVLMRFYTVPTAKEARRSVVWAIALIGAFYLFTLVLGYGAAAIVGPDRILAAAGGQNSAAPLLAFELGGVLLLGIISAVAFATILAVVAGLTITASASFAHDIYASVIKRGKVEENAQVRVSRITAVVIGLLAIGLGILANGQNIAFLVALAFAVAAAANLPTIVYSLFWRRFNTTGALWSMYGGLISTIVLIVFSPAVSGSKSAMLPGMDFDWFPLSNPGIVSIPLAFGLGIVGTLVGGGRPEDPAKAAEMEVRSLTGVGAEKAVVH GT:EXON 1|1-544:0| BL:SWS:NREP 1 BL:SWS:REP 35->540|YWCA_BACSU|3e-81|45.6|489/513| TM:NTM 13 TM:REGION 15->36| TM:REGION 60->82| TM:REGION 87->109| TM:REGION 134->156| TM:REGION 167->189| TM:REGION 200->222| TM:REGION 261->283| TM:REGION 298->320| TM:REGION 344->366| TM:REGION 395->417| TM:REGION 423->445| TM:REGION 456->478| TM:REGION 494->516| SEG 25->32|vvvtmvvv| SEG 93->104|lvawlvalllva| SEG 144->159|llaqmagagglvalll| SEG 169->187|lviavvgvlmivyvlvggm| SEG 259->275|lnflslglalvlgtagl| SEG 338->350|llafelggvlllg| SEG 402->416|avvigllaiglgila| SEG 422->435|aflvalafavaaaa| SEG 506->517|glgivgtlvggg| RP:PFM:NREP 1 RP:PFM:REP 45->461|PF00474|2e-24|28.2|397/401|SSF| HM:PFM:NREP 1 HM:PFM:REP 45->461|PF00474|1.7e-97|33.5|403/406|SSF| GO:PFM:NREP 4 GO:PFM GO:0005215|"GO:transporter activity"|PF00474|IPR001734| GO:PFM GO:0006810|"GO:transport"|PF00474|IPR001734| GO:PFM GO:0016020|"GO:membrane"|PF00474|IPR001734| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00474|IPR001734| OP:NHOMO 498 OP:NHOMOORG 372 OP:PATTERN ---1-----------------------1--11------------------------------------ --1--112111--1-------2---2------22223245----121--11-111111--222-3166332-----------1--111----------------1---------------------1-1-111-11-1122----1-----------------------1-------------111------1-1111111121111111111111111112211------2-2------------------------------------------------------------------------------------------------------------------------12--------1--------1211---------11----------------------23222511-----------------21111-12221111-------------411-----------------------------11-1-------1111112222211332222123121432-111-11---1121--2131---22----------322-----121-1-111-3332232--11311---2--1-----1--1-------12111--11-1111111111111-1111111111111----1--------11111111111111111-1111111111111111111111111111111111111111111111-1111--111111111111---------------111---------------112111111-2112122211132222111---------11111-1-1-1-111--111111111111--1-------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 387-391, 393-394, 518-521, 536-544| PSIPRED ccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccc //