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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56641.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  380/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:581 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   35->151,291->361 PF00474 * SSF 1e-13 38.5 %
:HMM:PFM   35->202 PF00474 * SSF 4.7e-30 25.6 168/406  
:HMM:PFM   305->496 PF00474 * SSF 3.9e-17 30.3 188/406  
:BLT:SWISS 19->151,291->365 ACTP_SHISS 2e-17 34.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56641.1 GT:GENE BAD56641.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1956962..1958707) GB:FROM 1956962 GB:TO 1958707 GB:DIRECTION - GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56641.1 LENGTH 581 SQ:AASEQ MQAPALTLAALLLAALATVAIGAYGVRLARTTSDFLVASRSVGPRWNAAAISGEYLSAASFLGVAGLIAKYGADALWYPVGFTAGYLGLLMFVAAPLRRSGAYTVPDFAEFRLGSVPLRRLAAVVVVLVCAVYLIPQFQGAGLTLRILLGVPSWVGALAVGAIVIANVVGGGMRSITLVQAFQYWLKLTAVALPALVLFGHFLGAHRDLGTAAPPVVAEQTTVEITTDVLVQVSAPQEVTIAGRLDERPVDGAVVLAPGRHELAAGTDLTLPAGAAVPVVAGAPADDAGWLRPGGGFGEPHPTYQVYSLIIATFLGTMGLPHVLVRFYTNPDGRAARATAFAVIGLVGVFYLFPILLGVFARLWVPQLLITGASDAAVLLLPGSVLGGLGGQLIAALVAAGAIAAFLSTSSGLLVSIAGVLSTDMLRGRVRDFRLAALVAGAVPLALSLTVVSLDLSRTVGLAFAVAASTLCPLLVLGIWWRGLTAKGAAAGLTAGGLLAGTATAVSVLGGVSERVADGWLGAVLGYPAAVSVPLAFLTMIAVSKLTRGLPATQVRAVFVRMHAPERLGMGSDREPGLRTA GT:EXON 1|1-581:0| BL:SWS:NREP 1 BL:SWS:REP 19->151,291->365|ACTP_SHISS|2e-17|34.6|205/549| TM:NTM 14 TM:REGION 5->27| TM:REGION 55->75| TM:REGION 77->97| TM:REGION 121->143| TM:REGION 146->168| TM:REGION 185->207| TM:REGION 306->328| TM:REGION 338->360| TM:REGION 368->390| TM:REGION 400->422| TM:REGION 432->454| TM:REGION 462->484| TM:REGION 490->512| TM:REGION 521->543| SEG 5->18|altlaalllaalat| SEG 116->132|vplrrlaavvvvlvcav| SEG 155->172|vgalavgaivianvvggg| SEG 272->289|pagaavpvvagapaddag| SEG 379->407|lllpgsvlgglggqliaalvaagaiaafl| SEG 435->449|laalvagavplalsl| SEG 483->505|gltakgaaagltaggllagtata| RP:PFM:NREP 1 RP:PFM:REP 35->151,291->361|PF00474|1e-13|38.5|185/401|SSF| HM:PFM:NREP 2 HM:PFM:REP 35->202|PF00474|4.7e-30|25.6|168/406|SSF| HM:PFM:REP 305->496|PF00474|3.9e-17|30.3|188/406|SSF| GO:PFM:NREP 4 GO:PFM GO:0005215|"GO:transporter activity"|PF00474|IPR001734| GO:PFM GO:0006810|"GO:transport"|PF00474|IPR001734| GO:PFM GO:0016020|"GO:membrane"|PF00474|IPR001734| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00474|IPR001734| OP:NHOMO 542 OP:NHOMOORG 386 OP:PATTERN ---1--------------------1--1--11------------------------------------ --1--111111--1-------2---2------222222221---121--11-222113--222-4364232--------------111----------------1---------------------1-1-111-1122222----11--------------------1-11------------11111----1-11111111111111-1111111111112211------2-----------------------------------------------------------------------------------------------------------------------1--12--------1--------1211---------11----------------------23212411-----------------21111-22222111-------------421-----------------------------11-1--1----2222222222222332222124222432-122122-112242-12231---12----------243-----121-1-111-4443233--22421---2--1-----1--1-------12111--11-1111111111111-1111111111111----1-1------11111111111111111-1111111111111111111111111111111111111111111111-1111--111111111111--------------1111---------------11211111112112122211122222111---------11111-1-1-1-111--111111111111--1-------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 289-290, 293-296, 579-581| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHcccccEEEEHHHHHHccccHHHHHHHHHHccHHHHHHHHHcHHHHHHHcccccccccccHHHHHccccccHHHcccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEEccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHEEEccccccHHHHHHHHHHHcHHHHccccccccccccc //