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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56643.1
DDBJ      :             putative two-component system response regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  381/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
c.23.1
:280 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->129 2qv0A PDBj 1e-18 45.1 %
:RPS:PDB   55->129 3cwoX PDBj 3e-15 18.7 %
:RPS:PDB   163->269 3d6wB PDBj 4e-22 16.8 %
:RPS:SCOP  38->129 1a0oA  c.23.1.1 * 2e-13 29.3 %
:HMM:SCOP  25->144 1s8nA_ c.23.1.1 * 2.3e-27 40.7 %
:RPS:PFM   37->129 PF00072 * Response_reg 8e-13 47.6 %
:RPS:PFM   168->269 PF04397 * LytTR 3e-14 42.1 %
:HMM:PFM   30->139 PF00072 * Response_reg 5.6e-25 38.5 109/112  
:HMM:PFM   171->269 PF04397 * LytTR 9.3e-24 37.2 94/98  
:BLT:SWISS 36->269 LYTT_BACSU 1e-22 27.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56643.1 GT:GENE BAD56643.1 GT:PRODUCT putative two-component system response regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1959071..1959913) GB:FROM 1959071 GB:TO 1959913 GB:DIRECTION - GB:PRODUCT putative two-component system response regulator GB:PROTEIN_ID BAD56643.1 LENGTH 280 SQ:AASEQ MTGAAPAATGGPYDGRTVTQHTGAAAALRVLAVDDEKPALDELVYLLRTRPEIGEIHAAADATSALRLLRTHAVDAVFLDINMPGLDGMELAGILSEFANPPAVVFVTAHDDRAVSAFDLGAVDYLLKPLREARLAEAVRRISQARATPAQAAAPRQDPNEVIPVELGGVTTLVHRSTVSWVEADGDYARLHTAAGSHLVRIPLSALESRWENAGFLRVHRSYLVALRLVTGLRTVGNGTVVCLRGEGDAAAVELPVSRRQVRELKQRLVHGPRQTWTQR GT:EXON 1|1-280:0| BL:SWS:NREP 1 BL:SWS:REP 36->269|LYTT_BACSU|1e-22|27.4|230/241| SEG 2->12|tgaapaatggp| SEG 24->35|aaaalrvlavdd| SEG 130->141|lrearlaeavrr| SEG 144->157|qaratpaqaaaprq| BL:PDB:NREP 1 BL:PDB:REP 39->129|2qv0A|1e-18|45.1|91/122| RP:PDB:NREP 2 RP:PDB:REP 55->129|3cwoX|3e-15|18.7|75/236| RP:PDB:REP 163->269|3d6wB|4e-22|16.8|101/107| RP:PFM:NREP 2 RP:PFM:REP 37->129|PF00072|8e-13|47.6|84/111|Response_reg| RP:PFM:REP 168->269|PF04397|3e-14|42.1|95/97|LytTR| HM:PFM:NREP 2 HM:PFM:REP 30->139|PF00072|5.6e-25|38.5|109/112|Response_reg| HM:PFM:REP 171->269|PF04397|9.3e-24|37.2|94/98|LytTR| GO:PFM:NREP 3 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| RP:SCP:NREP 1 RP:SCP:REP 38->129|1a0oA|2e-13|29.3|92/128|c.23.1.1| HM:SCP:REP 25->144|1s8nA_|2.3e-27|40.7|118/190|c.23.1.1|1/1|CheY-like| OP:NHOMO 609 OP:NHOMOORG 385 OP:PATTERN -------------------------------------------------------------------- 145-1----------------1---1------111111111----1------111--1--111-22211111------1111-----1114----------A-22C-867-----------------------------------------------------------------------------------1111111111111111112211111-112111------61-11111111111111111111------------11----1--1---2221----11-------------------1---------------12111111111-1--1111111-1---1-1224461111123111--1-52----1-----1--2-----2---------------------------------------------------------------------1------------------------------22321-----------1-111-----111-11--1111--1111-1221112-2111111141----------112---1-122-22221--1-11-2--1-211---1-------------------1------3211153132-12222-111221111-112----1-1------2222-222222222222-222222222222212222222222111111111111111111122212222--211111111111---1---------111-1---------------111111--2-111111-1211-1--1111----------1223222222222245434332332212-----------------------------------------------1---------5- --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------1-----------1--------3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 202 STR:RPRED 72.1 SQ:SECSTR ###################################cTTcEEcHHHHHHTcTTEEEEEccccccTTHHHHHHHccccEEEEcccTTccHHHHHHHHHHHcccccEEEEccccHHHHHHHHTTccEEEEcH############################ccccEEEEEccccEEEEEGGGGEEEEEETTEEEEEEcccEEEEcccHHHHHHHccTTTEEEEETTEEEEGGGEEEEEEEETTEEEEETTc####ccEEEEcTTTHHHHHHHH########### DISOP:02AL 1-27, 144-161, 273-280| PSIPRED ccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHcccccccHHHHHHHHHHEEEEEEccEEEEEccccEEEEEEcccEEEEEEccccEEHHHHHHHHHHHHcccccEEEEcEEEEEHHHHHHccEEcccEEEEEEcccccccEEEEEEHHHHHHHHHHHHcccccccccc //