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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56647.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  442/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
f.38.1
:397 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  71->157 1pw4A  f.38.1.1 * 5e-06 16.1 %
:HMM:SCOP  1->374 1pw4A_ f.38.1.1 * 1.3e-47 28.5 %
:RPS:PFM   7->157 PF07690 * MFS_1 2e-11 29.1 %
:HMM:PFM   9->205 PF07690 * MFS_1 5.5e-27 26.8 194/353  
:HMM:PFM   202->390 PF07690 * MFS_1 1.2e-09 23.4 184/353  
:BLT:SWISS 3->268 YTBD_BACSU 3e-31 36.5 %
:PROS 311->322|PS00381|CLP_PROTEASE_SER
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56647.1 GT:GENE BAD56647.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1965535..1966728) GB:FROM 1965535 GB:TO 1966728 GB:DIRECTION - GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56647.1 LENGTH 397 SQ:AASEQ MPPAVYVLGLAIFAQGTSELLLAGLLTEVSADLAIGIPRAGLLISAFALGMLVGAPVLAVATLRLPRRDTLLAFLAIFVAAHVVGALTADYAVLFGTRVVAAFVYAGFWALSAATVVDLVPAAARGRAMSIVAGGLTVATIVGLPAGTVIGQQLGWRAAFWAVAALSAAAAIGVLAVVPSARPAAEPRLRRELRAMAQPRLWLAYGSTALSTGSVFAVFGYLGAALTDHTGLPANWVPAVLALYGVGGLLGITLGGRTADAHPFATLYVGGAGMTATAAALALALDHAAVVVALAFLLGAFGFATNPALNTRVFGVAASAPTLAAATNFSAFNVGITVGPWIGGLALGAGLGYPAVAWLGAALGVAMIATVGWADVLERKAVHPAAPTADPLPEPVG GT:EXON 1|1-397:0| BL:SWS:NREP 1 BL:SWS:REP 3->268|YTBD_BACSU|3e-31|36.5|266/396| PROS 311->322|PS00381|CLP_PROTEASE_SER|PDOC00358| TM:NTM 10 TM:REGION 4->26| TM:REGION 38->60| TM:REGION 72->94| TM:REGION 101->123| TM:REGION 129->151| TM:REGION 159->181| TM:REGION 207->229| TM:REGION 233->255| TM:REGION 274->296| TM:REGION 333->355| SEG 158->178|aafwavaalsaaaaigvlavv| SEG 181->195|arpaaeprlrrelra| SEG 239->256|avlalygvggllgitlgg| SEG 270->305|ggagmtataaalalaldhaavvvalafllgafgfat| SEG 317->326|aasaptlaaa| SEG 343->352|gglalgaglg| SEG 355->366|avawlgaalgva| RP:PFM:NREP 1 RP:PFM:REP 7->157|PF07690|2e-11|29.1|151/347|MFS_1| HM:PFM:NREP 2 HM:PFM:REP 9->205|PF07690|5.5e-27|26.8|194/353|MFS_1| HM:PFM:REP 202->390|PF07690|1.2e-09|23.4|184/353|MFS_1| GO:PFM:NREP 1 GO:PFM GO:0055085|"GO:transmembrane transport"|PF07690|IPR011701| RP:SCP:NREP 1 RP:SCP:REP 71->157|1pw4A|5e-06|16.1|87/434|f.38.1.1| HM:SCP:REP 1->374|1pw4A_|1.3e-47|28.5|372/447|f.38.1.1|1/1|MFS general substrate transporter| OP:NHOMO 1155 OP:NHOMOORG 453 OP:PATTERN ----------------1---------------------1----------------------------- -----11122321321111-11--1411111111115833--1-3235222134411211--1-246254-2111211--2---------21-1-------2-112--12-----------------------------------------------------------------------------------633333333-242234213355224--1221211111-B6211121111111111323231-3----1-----33--1-1--2111-----------------------------------------------------------1-----------------21------------------4----11-13-4211--1-111----------4-2221111117--43323325242442-1--21------12222222212331--2--------------------------------1-25322668A6983333388453334338726463--442-2311311-4223--1-131-----------2-1-------111---11-1----------1---11---111-1-11--11-1--------12121--2-21121121223111--11111-------------3413-934554444444-444444444454544444257546--14244334333434343943344441-211111111111---------1111---26111-1--11-1---133333241117166454668245652767--1111-1--1--1-----112--55332331112------111----------------------------------------------------- ---------------1------1-------------------------1-------1--111---------------------------------------1--------------------------------------------------------------------A---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 178-194, 381-390, 395-397| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc //