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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56648.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  275/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:190 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->183 2i10A PDBj 5e-17 35.8 %
:RPS:PDB   10->188 3bruA PDBj 3e-17 17.3 %
:RPS:SCOP  10->63 1z77A1  a.4.1.9 * 6e-10 25.9 %
:RPS:SCOP  101->190 2g7sA2  a.121.1.1 * 2e-10 27.8 %
:HMM:SCOP  1->84 1t33A1 a.4.1.9 * 5.3e-15 33.7 %
:HMM:SCOP  78->191 2i10A2 a.121.1.1 * 1.8e-26 49.1 %
:RPS:PFM   13->56 PF00440 * TetR_N 3e-05 45.5 %
:HMM:PFM   13->57 PF00440 * TetR_N 1.7e-14 33.3 45/47  
:BLT:SWISS 3->188 YCFQ_ECOLI 2e-21 34.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56648.1 GT:GENE BAD56648.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1966808..1967380) GB:FROM 1966808 GB:TO 1967380 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56648.1 LENGTH 190 SQ:AASEQ MARPRQFDEDRAVDAAMRAFWTAGYEATSTQDLCAATGLGRSSIYNTFVSKRELFDRALRRYMAVKNVDLFALLAEPGPAREKLHTLVRRAADPPADDPAGCLVVNSLVELAPRDAEIAATLRADEDRRLDALVATIERAQRDGEIEAGRDARALAHFVVATIGGLRVAARGGADRATLAAIADTALRCL GT:EXON 1|1-190:0| BL:SWS:NREP 1 BL:SWS:REP 3->188|YCFQ_ECOLI|2e-21|34.6|185/210| SEG 91->100|aadppaddpa| BL:PDB:NREP 1 BL:PDB:REP 9->183|2i10A|5e-17|35.8|165/173| RP:PDB:NREP 1 RP:PDB:REP 10->188|3bruA|3e-17|17.3|179/188| RP:PFM:NREP 1 RP:PFM:REP 13->56|PF00440|3e-05|45.5|44/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 13->57|PF00440|1.7e-14|33.3|45/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 10->63|1z77A1|6e-10|25.9|54/75|a.4.1.9| RP:SCP:REP 101->190|2g7sA2|2e-10|27.8|90/116|a.121.1.1| HM:SCP:REP 1->84|1t33A1|5.3e-15|33.7|83/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 78->191|2i10A2|1.8e-26|49.1|114/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 465 OP:NHOMOORG 276 OP:PATTERN -------------------------------------------------------------------- ----3----------------1--13------322222211---3--11--1-----1------4-6292-------------------------------2---7121-----------------------------------4-3-1--------------1--1------------------------1-111111--1-121-121-1111--2-------------23-------------------------------11----1--------------------------------------------------------1---------------------------------------------2-23--------5-534---21-2-----------2-12222111-21-411133-66723-2-1-13-----22-11111111111-1--1---------------------------------2--22142333322----1131------41321-1--11------1-21-2-2---211------------------------------1----1--111111-----------------------------21--11212-12222222-222222-1212-------------111131-1111111111-211111111121111111-2221--1-2122222222222222211111112----------------------------1-------1---------111111111-2-22121211------111-------------22222211111-111--------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 190 STR:RPRED 100.0 SQ:SECSTR ccccccTTHHHHHHHHHHHHHHccTTTccHHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHTcTTccHHHHHHHHHHHHHHHTTTTccccHHHHHHHTGGccTHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccTTccHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHGGHH DISOP:02AL 1-6| PSIPRED ccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHc //