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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56651.1
DDBJ      :             putative glycosyl hydrolase
Swiss-Prot:             

Homologs  Archaea  18/68 : Bacteria  595/915 : Eukaryota  105/199 : Viruses  0/175   --->[See Alignment]
b.1.18b.71.1c.1.8
:577 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->472 1ehaA PDBj e-100 41.7 %
:RPS:PDB   2->543 2bhuA PDBj 3e-60 37.4 %
:RPS:SCOP  2->77 2bhuA1  b.1.18.2 * 1e-09 38.9 %
:RPS:SCOP  80->473 1eh9A3  c.1.8.1 * 1e-42 43.8 %
:RPS:SCOP  518->570 1eh9A2  b.71.1.1 * 1e-17 18.9 %
:HMM:SCOP  1->76 2bhuA1 b.1.18.2 * 2.7e-15 39.2 %
:HMM:SCOP  83->501 1eh9A3 c.1.8.1 * 1.6e-86 30.6 %
:RPS:PFM   111->247 PF00128 * Alpha-amylase 1e-16 44.3 %
:HMM:PFM   107->199 PF00128 * Alpha-amylase 2.2e-18 28.1 89/316  
:HMM:PFM   217->263 PF00128 * Alpha-amylase 0.0001 21.7 46/316  
:HMM:PFM   466->566 PF11941 * DUF3459 1.4e-13 37.6 101/115  
:BLT:SWISS 2->569 TREZ_MYCTU 0.0 59.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56651.1 GT:GENE BAD56651.1 GT:PRODUCT putative glycosyl hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1968700..1970433 GB:FROM 1968700 GB:TO 1970433 GB:DIRECTION + GB:PRODUCT putative glycosyl hydrolase GB:PROTEIN_ID BAD56651.1 LENGTH 577 SQ:AASEQ MFEVWAPLPRTVRVEVDGVGHAMTRSPDGWWRAEVAAGEGARYGFLLDDDPTVLPDPRSPRQPDGVHGRSAVHALDPAAWTDADWTGRPLAGAVFYELHIGTFTPQGTFDAAIDRLDHLVDLGVTVVEIMPVNAFDGTHNWGYDGVLWYAVHEGYGGPDGLQRFVNACHARGLAVCLDVVYNHLGPSGNYLPRFGPYLASGRNTWGQSLNLDGAGSDHVRRYILDNALRWLRDFHIDALRLDAVHALVDRTATHLLAELAAETERLSAHVRRPLSLIAESDLNDPRLITPRAAGGYGLTGQWNDDLHHAVHTAVSGERQGYYADFGTLACLAETLTSGFFHAGTYSSFRGRTHGRPLDRDLIPGFRLLGYTCTHDQIGNRALGDRPGAYLTDGQLAVKAALVLCSPFTPMLFMGEEWGARTPFQFFTAHTDPQIGAATAAGRKAEFAEHGWTAEEVPDPQDPATFERSKLDWSDLDDPDRARLLACYRALLALRRGRPELTDPSLRHVGVDYDEQARWLVLHRGSLHLVCNLSEDPVTVPVTGRSLLYWEPPTLGPTATTVPAHSFTLLEDRPVGER GT:EXON 1|1-577:0| BL:SWS:NREP 1 BL:SWS:REP 2->569|TREZ_MYCTU|0.0|59.9|566/580| SEG 46->57|lldddptvlpdp| SEG 251->264|tathllaelaaete| SEG 474->500|dlddpdrarllacyrallalrrgrpel| BL:PDB:NREP 1 BL:PDB:REP 1->472|1ehaA|e-100|41.7|451/557| RP:PDB:NREP 1 RP:PDB:REP 2->543|2bhuA|3e-60|37.4|521/580| RP:PFM:NREP 1 RP:PFM:REP 111->247|PF00128|1e-16|44.3|131/296|Alpha-amylase| HM:PFM:NREP 3 HM:PFM:REP 107->199|PF00128|2.2e-18|28.1|89/316|Alpha-amylase| HM:PFM:REP 217->263|PF00128|0.0001|21.7|46/316|Alpha-amylase| HM:PFM:REP 466->566|PF11941|1.4e-13|37.6|101/115|DUF3459| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF00128|IPR006047| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00128|IPR006047| GO:PFM GO:0043169|"GO:cation binding"|PF00128|IPR006047| RP:SCP:NREP 3 RP:SCP:REP 2->77|2bhuA1|1e-09|38.9|72/97|b.1.18.2| RP:SCP:REP 80->473|1eh9A3|1e-42|43.8|377/400|c.1.8.1| RP:SCP:REP 518->570|1eh9A2|1e-17|18.9|53/67|b.71.1.1| HM:SCP:REP 1->76|2bhuA1|2.7e-15|39.2|74/0|b.1.18.2|1/1|E set domains| HM:SCP:REP 83->501|1eh9A3|1.6e-86|30.6|395/0|c.1.8.1|1/1|(Trans)glycosidases| OP:NHOMO 1718 OP:NHOMOORG 718 OP:PATTERN -------222222223--------1--1-11---------------1---22------1--1------ 335-212333333-23434-44--4433333344443444444553423433444332----414--564252222221--1311---333111-----212-2331651222222222222222---------1-33322---411583552222212322213133364222222222222233--1---3-333331333333323-333-3334124-344-------31--------------------2--11-----11--11-1-------333332321122222322222111111111111143211-333131-12-------3-21122-4342-212-13--11111-42-1--13-2-115----------134533335443------------43434333413-122465465544313---2256552--22222222333-3256------------------------------11----4433444144434444446444432445343---4441-3---1-44---42312---------124241---1-212122111-423-111-256456515-----------------------1122323312--3-322222-2-222222-22-----3112------13112111111111111-111111121111111111111111---332333333333333211111111--111111111111-------------2---1111332-22122222----------33332323223323323332222222221-11211111112113-55555555------3---------------1-1----------------2--------1232312111271 --11-11-----11311-112211111-------1-111111111--1112221112121111--1-1-------------111-----12-1111111-1-1---------4121-1------1--1-361-1-----11--1111--1---1-1111---11---11-----11233*333223325152------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 575 STR:RPRED 99.7 SQ:SECSTR EEEEEccccccEEEEETTEEEEcEEEETTEEEEEEcccTTcEEEEEETTEEEccTTccccccTTcTTccEEcccTTccccccTTcccccGGGccEEEEcHHHHcccccHHHHHHTHHHHHHHTccEEEEcccEEccccccccTTccEEEEEcGGGccHHHHHHHHHHHHHTTcEEEEEEcccccccccccHHHHcGGGEEEEEEccccEEEcETTcHHHHHHHHHHHHHHHHHHcccEEEETTGGGcccccccHccccHHHHHHHHHHTTccccEEEEEcccccTHHHHTGGGHTTcccEEEcTHHHHHHHHHHHccccGGGGGcccHHHHHHHHHHccccEEEEEccTTccEEEEcccTTccGGGEEEEcccHHHHHTcTTcccGGGcTTccHHHHHHHHHHHcccEEEEETTGGGTccccccccccccHHHHHHHHHHHHHHTTTHccccccccccTTcHHHHHTTccccGGGGcHHHHHHHHHHHHHHHHHHHcTTTTcccGGGEEEEEETTEEEEEETTEEEEEEEEcccccEEGGGcccccEEcccccccccccEEEccEEEEcEEcccc## DISOP:02AL 576-577| PSIPRED ccEEEcccccEEEEEEcccccccccccccEEEEEEEcccccEEEEEEEcccEEEEcccccccccccccccEEEEcccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEccccccccccccccccccccEEcHHcccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHcccccccHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEEcHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccHHHHHHcccccHHcccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEEEEEcccEEEEEEEcccccEEEEEccEEEEEccccccccccEEEcccEEEEEEEcccccc //