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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56660.1
DDBJ      :             putative glycosyl hydrolase
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  240/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.1.8
:808 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   25->312,459->724 1iv8A PDBj 6e-30 39.6 %
:RPS:PDB   39->290 2dieA PDBj 2e-18 18.5 %
:RPS:PDB   624->801 1cbyA PDBj 4e-04 8.7 %
:RPS:SCOP  25->722 1iv8A2  c.1.8.1 * 4e-96 31.8 %
:HMM:SCOP  25->722 1iv8A2 c.1.8.1 * 4.6e-117 32.5 %
:RPS:PFM   48->150 PF00128 * Alpha-amylase 6e-06 29.9 %
:HMM:PFM   48->121 PF00128 * Alpha-amylase 3.4e-18 34.2 73/316  
:BLT:SWISS 24->808 TREY_MYCTU 0.0 51.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56660.1 GT:GENE BAD56660.1 GT:PRODUCT putative glycosyl hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1978969..1981395) GB:FROM 1978969 GB:TO 1981395 GB:DIRECTION - GB:PRODUCT putative glycosyl hydrolase GB:PROTEIN_ID BAD56660.1 LENGTH 808 SQ:AASEQ MTAPDPLHHTDPIVRGRAVTRQTPVRSTYRLQLRPDALTFADARAIAEYLQQLGISHLYLSPILTATHGSTHGYDVTDPTTVSAALGGPLGLKALADEVRTRGMGLIVDLVPNHVGVADPRQNPWWWDVLRNGRDSRYARFFDIDWSPGNGAGGRLALPVLANENDPAALTVDRSGPEPMLALHDLRFPIAPGTDGDNALRIHDKQHYRLVSWKAGVCTYRRFFAVSTLAALRQEDPEVFELTHRELAAWCEHDLIDGVRVDHPDGLSYPAAYLTRLRQLIGPHRLLLVEKILANREPLDPTLPIDGTTGYDALAGVGGVLIDPDGEHALTELSRRVAGHGSDRAWIGETEHRIKRAVAESILAPELRRLVAAIKRDAAAESFDTLALTNATIEVLAFMPVYRADYAPLAGMTGAVIAEVERRNSELTAPLNVLVAALAVGGEAAMRFEQVCGAMTAKAVEDTMFYRAVRLVSLQEVGGNPARFGHSVNEFHLANIERAQRWPATMTTLSTHDTKRGEDVRARIGVLSQVASVWARSVESWLEKTPPPDGATALFLLQNMFGVWPADGRPASSVPGLRERLHRYAEKAMREAGLRTSWEEPDGEFEAAVHGWLDAVVDGPVGAELGDLVHDLAPHAWSDSLAQKLLQLCGPGIPDVYQGCELWEDSLVDPDNRRPVDFPARTGMLQSLTGTPALDTSGAAKMWVVAYALWLRRERPECFVGGAYLPLFATGEQAGRVVSYARGRVGEPPEVVVVVTRHSVGLGETGWGDTALDLPQGSWTDRLTGHTFQGRTRVEQIFARLPVALLVR GT:EXON 1|1-808:0| BL:SWS:NREP 1 BL:SWS:REP 24->808|TREY_MYCTU|0.0|51.3|755/765| SEG 84->96|aalggplglkala| SEG 429->445|aplnvlvaalavggeaa| SEG 742->755|rgrvgeppevvvvv| BL:PDB:NREP 1 BL:PDB:REP 25->312,459->724|1iv8A|6e-30|39.6|514/701| RP:PDB:NREP 2 RP:PDB:REP 39->290|2dieA|2e-18|18.5|233/481| RP:PDB:REP 624->801|1cbyA|4e-04|8.7|161/227| RP:PFM:NREP 1 RP:PFM:REP 48->150|PF00128|6e-06|29.9|97/296|Alpha-amylase| HM:PFM:NREP 1 HM:PFM:REP 48->121|PF00128|3.4e-18|34.2|73/316|Alpha-amylase| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF00128|IPR006047| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00128|IPR006047| GO:PFM GO:0043169|"GO:cation binding"|PF00128|IPR006047| RP:SCP:NREP 1 RP:SCP:REP 25->722|1iv8A2|4e-96|31.8|644/653|c.1.8.1| HM:SCP:REP 25->722|1iv8A2|4.6e-117|32.5|644/653|c.1.8.1|1/1|(Trans)glycosidases| OP:NHOMO 253 OP:NHOMOORG 251 OP:PATTERN --1-----11111111------------------------------------------1--------- 111----111111--1121-11--1-111111111111111111111--11111111-----1-1--111------------1----------------------111----------------1-----------111---------1-11-11------------111-------------111-------------------------11-1--------------------------------------11---1-----11--11-----------------------121----------------------------------------------------------------1----1--------------------111111111111------------111111111-1----1111111111-------1111---11111111-11-1-11------------------------------------1-11111-1111111111111111-111111---111--1-----11----11-1-----------111------1---------111-11--1111111-1-------------------------11---------------------------------1----------1-----------------------1-------------------11-1111111111111--------------------------------------------1--------------------1-11111111111111111-----------11--------1--1-11111111------------------------------------------------------------11- --------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 669 STR:RPRED 82.8 SQ:SECSTR HEcGGGTccccGGGccccGGGccEEEcccTTcccccccHHHHHHHHHHHHHHHTccEEEEccccccccTTcccTTcccTTccccTTccHHHHHHHHHHHHHTTcEEEEEEcccEEccccEEEEEEEEEEETTEEEEEccccEEEEEEEEcccTTTTTcccHHHcccTTEEEccTTTccccccccGGGEEEEccccccccccccEEEccTTcccccccccTTccccccccEEEcTTcHHHHHHHHHHHHHHHHHHTccEEEETTGGGccHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHccTTEEEEHHHH###HccHHHHHHHHTTTcHHHH######################################################################################################################HTTTTGGGTccccGGGccTTccTTcccccHHHHHHHHHHH##TTcccEEccccccccccHHHHHHHHGGGGcHHHH#HHHHHHHHHccccccHHHHHHHHHHH########HHHcTTcccHHcTTcccccccHHHHHHHHHHHHTTccHHHHHHcEEEcccTTcccHHHHTTTcHHHHHccccHHHHHHTTcccEEEEETTGGGTcccccTTTTccccccccTTccTTcTTccGGGccTTcHHHHHHHHHHHHHHHcHHHHHHcEEEEEEEETTcTTTEEEEEEEccccEEEEEEEcccccEEETTEEcGGGGTccTTcEEEETTTccEEEEEEEEEEEEEEc####### DISOP:02AL 1-2| PSIPRED ccccccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccHHHHHHHHHccccccccccEEEccccccccccEEEcccccccccccccEEEccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccHHHHHHHcccEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHHcEEEEEccccccccccccHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccccccEEEEEEcccccccccccccccEEEcccccccccccccccccccHHHHHHHHccEEEEcc //