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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56661.1
DDBJ      :             putative glycosyl hydrolase
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  572/915 : Eukaryota  92/199 : Viruses  0/175   --->[See Alignment]
b.1.18b.71.1c.1.8
:706 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->661 2vuyB PDBj 0.0 51.7 %
:RPS:PDB   15->703 2e8yA PDBj 5e-76 21.7 %
:RPS:SCOP  67->580 2fhbA5  c.1.8.1 * 1e-71 17.6 %
:RPS:SCOP  596->704 1bf2A2  b.71.1.1 * 8e-17 22.0 %
:HMM:SCOP  18->151 1bf2A1 b.1.18.2 * 6.9e-42 49.2 %
:HMM:SCOP  142->583 1bf2A3 c.1.8.1 * 4.3e-130 39.9 %
:HMM:SCOP  593->705 1bf2A2 b.71.1.1 * 3.4e-28 44.2 %
:RPS:PFM   24->109 PF02922 * CBM_48 8e-07 48.1 %
:RPS:PFM   192->531 PF00128 * Alpha-amylase 5e-25 42.2 %
:HMM:PFM   23->108 PF02922 * CBM_48 8.3e-23 41.0 78/84  
:HMM:PFM   193->535 PF00128 * Alpha-amylase 5.9e-20 24.4 238/316  
:BLT:SWISS 16->703 GLGX_MYCTU 0.0 76.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56661.1 GT:GENE BAD56661.1 GT:PRODUCT putative glycosyl hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1981404..1983524) GB:FROM 1981404 GB:TO 1983524 GB:DIRECTION - GB:PRODUCT putative glycosyl hydrolase GB:PROTEIN_ID BAD56661.1 LENGTH 706 SQ:AASEQ MVQPDHSPSDVTPLGVWPGNAYPLGATYDGAGTNFSLFSEVAEAVDLCLIDRDGAETRVRLDEVDGYVWHAYLPTIGPGQRYGFRVHGPYDPERGLRCDPSKLLLDPYGKAFDGDFDDDPSLYTFGLDSLGHTMTGVVINPFFDWGADRAPNRPYHETVIYEAHVKGMTMTHPDVPEELRGTYAGIAHPAVVEHLKSLGITAIELMPVHQFLHDRVLLDQGLRNYWGYNSFGYLAPHNGYAASPRGGAAVTEFKAMVRALHAEGIEVILDVVYNHTAEGNHLGPTIAFRGIDNAAYYRLVEDDPSKYMDYTGTGNSLNVRHPHTLQLIMDSLRYWILDMHVDGFRFDLAATLARELHDVDRLSTFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPGLWTEWNGKYRDTVRDYWRGEPATLGEFASRLTGSSDLYEATGRRPSASINFITAHDGFTLRDLVSYNEKHNEANGEDNRDGESHNRSWNCGVEGPTDDPEILALRAKQSRNLLATLILSQGTPMLAHGDEMGRTQQGNNNVYCQDSPLSWMDWSLAETNADLLEFTRRVIGLRTEHPVFRRRRFLAGRPIRSAGAARDIAWLTPGGEEMTPADWDSGFGKSLAVYLNGQGIPEPGPRGERITDDSFLLCFNAHHDPMDFVLPGPGYGGPWLVALDCSAPDGRAEAQYDAAATVTVPARCLLVLRCPE GT:EXON 1|1-706:0| BL:SWS:NREP 1 BL:SWS:REP 16->703|GLGX_MYCTU|0.0|76.2|688/721| BL:PDB:NREP 1 BL:PDB:REP 18->661|2vuyB|0.0|51.7|642/711| RP:PDB:NREP 1 RP:PDB:REP 15->703|2e8yA|5e-76|21.7|604/712| RP:PFM:NREP 2 RP:PFM:REP 24->109|PF02922|8e-07|48.1|77/82|CBM_48| RP:PFM:REP 192->531|PF00128|5e-25|42.2|263/296|Alpha-amylase| HM:PFM:NREP 2 HM:PFM:REP 23->108|PF02922|8.3e-23|41.0|78/84|CBM_48| HM:PFM:REP 193->535|PF00128|5.9e-20|24.4|238/316|Alpha-amylase| GO:PFM:NREP 5 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF02922|IPR004193| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02922|IPR004193| GO:PFM GO:0003824|"GO:catalytic activity"|PF00128|IPR006047| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00128|IPR006047| GO:PFM GO:0043169|"GO:cation binding"|PF00128|IPR006047| RP:SCP:NREP 2 RP:SCP:REP 67->580|2fhbA5|1e-71|17.6|501/563|c.1.8.1| RP:SCP:REP 596->704|1bf2A2|8e-17|22.0|100/113|b.71.1.1| HM:SCP:REP 18->151|1bf2A1|6.9e-42|49.2|132/0|b.1.18.2|1/1|E set domains| HM:SCP:REP 142->583|1bf2A3|4.3e-130|39.9|436/0|c.1.8.1|1/1|(Trans)glycosidases| HM:SCP:REP 593->705|1bf2A2|3.4e-28|44.2|104/0|b.71.1.1|1/1|Glycosyl hydrolase domain| OP:NHOMO 1493 OP:NHOMOORG 676 OP:PATTERN -------222222222----------------------------------11---------1------ 235--13222222-13322-23--3322222243232344333333421322335413---1414--44414333222---12-1---2221-------212--13-64-122222222222221---------1-65511---21-2724422-11123222-2-32243222222222222533------1-333331231323222-222-2333-12-254--------1--------------------1--11---------11-------11222222221122222222222111111111111132211-22214--12-------3-2-12212422-121-24------1-22-1---4-2-1-4----------223322335333------------44433343312-1223443433332-1---1245442--33333333122-3146-------------------------------1----2322222-22322222234222221223222---2221-2---1-34---213-3---------1-32211-1--21-1-1----423-111-2334264-4-----------------------11223224122-3-431122-1-111121-21-----3112------14211111111111111-11111111111111111113332211-333333333333333221111111--222222222222-------------2-1-2111232-22121222----------23222233223333332221121211211122312121323222-33333333------2---------------1-2----------1--1112---1----122221211114- ----1------1--311-111111111------111111111111---11111-111-11111-1-1--1--1--1---------1---12111-11111-11-1-----114121---------------------------------------111---71111--12----14565*455454658165------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 696 STR:RPRED 98.6 SQ:SECSTR #######EcGccccHHHHccccccEEEEcccEEEEEEEcTTccEEEEEEEcTTcccEEEEcEEcGGGEEEEEEEcccTTcEEEEEEEETTEEccTTcccTTEEEccTTcccccGGGccEEcccGGGGcccTTTcccccccccccccccccccccGGGccEEEEcHHHHHHcTTcccccTTcGGGGGcTTcHHHHHHHHTccEEEEcccEEEccccTTcGGGTcccccccEEEEEEEccTTccccccHHHHHHHHHHHHHHHHTTcEEEEEEcTTccccGGGcHHHHHcTTTcccHHcccHccTTcccccTTcccccccTTcHHHHHHHHHHHHHHHHHHcccEEEETTGGGccHHHHHHHHHHHHHHcTTcEEEEccccccccccGGGcccGGGGGGcTTcEEEcHHHHHHHHcccccTcccHTcccGGGTcGGGHHHHHHHHcTTcccTTcccccccGGGEEEcccccccccHHHHHHHHcTTccHHHccTTTTTTcccHHHHHHHHHHHHHHHHTcccEEEEETTGGGTcccTTccccTTccHHHHcccHHHHHHTHHHHHHHHHHHHHHHHcGGGGcccHHHHHHHEHHHHHTTEEEEcTTcccccHHEEEEEcccEEEEEEcGGGGTcEcccTTTccccEEEEEEEccccEEEEEccccccEEEEEETEEccGGTEEEEEEEEEccEEEEEccEEEEEE### DISOP:02AL 1-9| PSIPRED cccccccccccccccccccccccccEEEccccEEEEEEcccccEEEEEEEcccccccEEEEEcccccEEEEEEcccccccEEEEEEEccccccccccccccEEEEccccEEEEccccccccEEEEEccccccccccEEEcccccccccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEEcccccccccccccccccccccccEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHccccccccHHHHHHHHHHHccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHEEccHHHHHcccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccccccHHHcccccccEEEEEEEcccccccccccccccccEEEEEEEcccccEEEEccccccccEEEEEEEccccccccccccccccEEEEccEEEEEEEEcc //