[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56670.1
DDBJ      :             putative transporter permease
Swiss-Prot:             

Homologs  Archaea  40/68 : Bacteria  578/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.22.1
:343 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   185->333 2nq2B PDBj 1e-17 43.9 %
:RPS:SCOP  13->335 1l7vA  f.22.1.1 * 2e-30 26.2 %
:HMM:SCOP  2->336 1l7vA_ f.22.1.1 * 6.2e-72 48.3 %
:RPS:PFM   58->335 PF01032 * FecCD 6e-27 36.7 %
:HMM:PFM   18->334 PF01032 * FecCD 5.1e-93 47.1 308/311  
:BLT:SWISS 55->333 Y087_METJA 2e-22 26.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56670.1 GT:GENE BAD56670.1 GT:PRODUCT putative transporter permease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1995995..1997026) GB:FROM 1995995 GB:TO 1997026 GB:DIRECTION - GB:PRODUCT putative transporter permease GB:PROTEIN_ID BAD56670.1 LENGTH 343 SQ:AASEQ MIRVRTSITLGVLSVAVCAAMVFATGLGAETLPVGSVWHVLRDRITGTAPADLGLDTIVWQLRVPRTVLAAIVGAGLALAGAAMQTLVRNPLADPFLLGVSSGAGVGAAAVITSGFFAGAGVWALSGGALAGAFLAATLVFLIASAQGGLTPLRLVLTGTVLGSAFAAFSSFLVFRSADPAAAQSVLFWLLGSLAGADWTRIALPLTVVVLAGVALLAAAGWLDALLVGADTAASVGVPVRQLRIALFVLLAVLVGVLVAVSGGIGFVGLVVPHAARLLVGPRHRDLLPVCALCGALFLVVADAATRILVRPTEIPVGVLTGLIGAPAFLLLLGRRTYRFGES GT:EXON 1|1-343:0| BL:SWS:NREP 1 BL:SWS:REP 55->333|Y087_METJA|2e-22|26.3|278/349| TM:NTM 10 TM:REGION 5->27| TM:REGION 65->87| TM:REGION 92->114| TM:REGION 122->144| TM:REGION 149->171| TM:REGION 175->197| TM:REGION 210->232| TM:REGION 252->274| TM:REGION 286->308| TM:REGION 313->334| SEG 68->83|vlaaivgaglalagaa| SEG 99->111|gvssgagvgaaav| SEG 118->142|agagvwalsggalagaflaatlvfl| SEG 164->178|safaafssflvfrsa| SEG 203->230|alpltvvvlagvallaaagwldallvga| SEG 246->264|alfvllavlvgvlvavsgg| BL:PDB:NREP 1 BL:PDB:REP 185->333|2nq2B|1e-17|43.9|148/300| RP:PFM:NREP 1 RP:PFM:REP 58->335|PF01032|6e-27|36.7|275/313|FecCD| HM:PFM:NREP 1 HM:PFM:REP 18->334|PF01032|5.1e-93|47.1|308/311|FecCD| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF01032|IPR000522| GO:PFM GO:0006810|"GO:transport"|PF01032|IPR000522| GO:PFM GO:0016020|"GO:membrane"|PF01032|IPR000522| RP:SCP:NREP 1 RP:SCP:REP 13->335|1l7vA|2e-30|26.2|305/324|f.22.1.1| HM:SCP:REP 2->336|1l7vA_|6.2e-72|48.3|317/324|f.22.1.1|1/1|ABC transporter involved in vitamin B12 uptake, BtuC| OP:NHOMO 1746 OP:NHOMOORG 618 OP:PATTERN --1-------------1----111222213211--11-112111163734A81-2222342-11---- -----2246673521------1---3----------3934-31-1221243-421--3--23-794336E3--------1211-----11----11---------1122----------------13112111212133121136-4-2222-----------32-1341-------------132--22-145BBCBCA9B6CBCCCA8899A9CCC3767642222222CC355555554555555311321-1----1---33-1--1--------11122221--111111111112333333333333122---222-23835777878758512222655251-1411-2A82--312123212-4-31-----11111221--1344232222222222223-11-11221322-4556223334441-12-23A111131-11111111-221--12----------------------------------122221233233-111111--11111231---12--11--1111412--1111-1-141---------1-11-54221122-311-----1---2411111134-252-22222----------11---11121121112211222121221111232222---112-------C1341623444354531-3331446153365333331889664441111121111111111611522232-333333323333--1-----------133A11112---1--1--5--11-11-22212322221522322-454---------13221111116462211---------------111------------4---------------------------1121122222--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 149 STR:RPRED 43.4 SQ:SECSTR ########################################################################################################################################################################################HHHHHHccccTTccHHHHHHHHHHHHHHHHHHHHTTTGGGGGGccHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHccccccTTTHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH########## DISOP:02AL 339-343| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccc //