[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56672.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  184/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:364 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   85->212 3e4rA PDBj 6e-11 29.7 %
:RPS:PDB   81->338 2czlA PDBj 9e-16 12.3 %
:RPS:SCOP  81->232 1us4A  c.94.1.1 * 2e-11 15.8 %
:HMM:SCOP  55->285 1xs5A_ c.94.1.1 * 1.7e-37 32.9 %
:RPS:PFM   85->212 PF09084 * NMT1 9e-11 36.2 %
:HMM:PFM   88->275 PF09084 * NMT1 3.3e-18 23.9 184/216  
:BLT:SWISS 85->244 SSUA_ECOLI 6e-15 32.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56672.1 GT:GENE BAD56672.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1998483..1999577 GB:FROM 1998483 GB:TO 1999577 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56672.1 LENGTH 364 SQ:AASEQ MSGTRTVLAGRRGRRLTAVLLAAATAATLGLTGCAKDDDATVAAANTPLPTEVPPGTKLVIADQQERLQTALRLSGELDTLPFTVEFANFVGGPAILEAFRAGAADVAPVGDVPPIHALAAGQDVPIVAAYRTSVDALKLAVAPGVPVTTLADLKGRKIAYAEGTAQQAAVLRALDKAGLDTGDVELVRLQLAEFLDAVRTGQVDVAPLIEPNVTRLLRTPGATVLPDSETHGIYSGLAYLYARREVTNDPARSAAVAALVRAYVRAYQWTNTHRAEWEQRYYVENQKVSPEDARRIVDSLGSYVFPHLDQDLIDRQQATIDLIDAAGELPRKVEAADGFDLRYDAVVTAAVTESGAAFEPKER GT:EXON 1|1-364:0| BL:SWS:NREP 1 BL:SWS:REP 85->244|SSUA_ECOLI|6e-15|32.7|159/319| SEG 3->33|gtrtvlagrrgrrltavllaaataatlgltg| SEG 102->115|agaadvapvgdvpp| SEG 252->267|arsaavaalvrayvra| BL:PDB:NREP 1 BL:PDB:REP 85->212|3e4rA|6e-11|29.7|128/291| RP:PDB:NREP 1 RP:PDB:REP 81->338|2czlA|9e-16|12.3|244/269| RP:PFM:NREP 1 RP:PFM:REP 85->212|PF09084|9e-11|36.2|127/200|NMT1| HM:PFM:NREP 1 HM:PFM:REP 88->275|PF09084|3.3e-18|23.9|184/216|NMT1| RP:SCP:NREP 1 RP:SCP:REP 81->232|1us4A|2e-11|15.8|152/298|c.94.1.1| HM:SCP:REP 55->285|1xs5A_|1.7e-37|32.9|222/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 305 OP:NHOMOORG 185 OP:PATTERN -------------------------------------------------------------------- ----1---111---122--------3------1---1-21-211--------11-------------2-1--------------------------------------------------------------------------1----------------------4-4---------------------1-11111111111111111----111-1-1-----------2------------------------11---------11--------------------------------------------------------------------------------------11------------------1--------7-225-1-1---1------------11111-24-2--111---1231-1-1-----2-------------------1-----------------------------------1-1-1--1544443-111133321111-1741312---331-2---31-22--1------------------------------------1------------2---------------------------------1--------------------------------------1111-111111111111-111111111111111111121211-------------------11111111---------------------------------------------------------A-43131324-3311-445------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 304 STR:RPRED 83.5 SQ:SECSTR #########################################EEcHHHHHHHHHHcTTcEcccHHHTHHHHHHHHHHHHHHccccEEEEcEccHHHHHHHHHTTcccEEEEEHHHHTTcTTTEEEcccccEEEcccccEEEEccEcEEcccccccTTcEEEEccTTcHHHHHHHHHccccEcccccEEEEccGGGHHHHHHTTcccEEEEcTTHHHHGGGGTcEEEEEHHHHHHHHHcccEEEEEEEEEGGGGcHHHHHHHHHHHHHHHHHHHHcGGGGHHHHHHHcTTccHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHTTccccccccccHccHHHc################### DISOP:02AL 1-10, 361-364| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHcccEEEEEEcHHHHHHHHHccccEEEEEEEEccccEEEEEEEcccccccHHHHcccEEEEccccHHHHHHHHHHHHccccHHcEEEEEccHHHHHHHHHcccEEEEEEccHHHHHHHHccccEEEEEcHHcccccccEEEEEcHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHHHHccccccccc //