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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56673.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  460/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:287 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   142->216 3dhwA PDBj 2e-05 20.0 %
:RPS:SCOP  130->281 2r6gG1  f.58.1.1 * 1e-09 13.8 %
:RPS:PFM   130->241 PF00528 * BPD_transp_1 2e-04 31.2 %
:HMM:PFM   105->277 PF00528 * BPD_transp_1 2.4e-28 26.3 171/185  
:BLT:SWISS 47->281 SSUC_ECOLI 3e-36 46.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56673.1 GT:GENE BAD56673.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1999574..2000437 GB:FROM 1999574 GB:TO 2000437 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56673.1 LENGTH 287 SQ:AASEQ MMATVEAGVLRRFGAAGTSQARQARGGLSRRRLGPGTPIPFGIALGPALLVGAWVLGSATGSLDPDTLPAPWTVAQTAGELIADGRLQSNLLTSLQRAGIGLALGVVIGVVLALIAGLSRVGEALLDGPIQIKRAIPTLALIPLFIVWFGIGEEMKLIVITLSVFVPVYINTHAYLRSVDSRYVELAETVRLSRAAFVRRVALPGSLPGFFIGLRLAVTISWLALVVVEQVNATSGIGYLMTQARTYGQIDVIVVGLVIYGLLGLFGDIAVRAVERKALSWRQTLGD GT:EXON 1|1-287:0| BL:SWS:NREP 1 BL:SWS:REP 47->281|SSUC_ECOLI|3e-36|46.0|235/263| TM:NTM 5 TM:REGION 37->59| TM:REGION 99->121| TM:REGION 141->163| TM:REGION 207->229| TM:REGION 249->271| SEG 20->33|qarqargglsrrrl| SEG 98->118|agiglalgvvigvvlaliagl| SEG 252->267|vivvglviygllglfg| RP:PDB:NREP 1 RP:PDB:REP 142->216|3dhwA|2e-05|20.0|75/203| RP:PFM:NREP 1 RP:PFM:REP 130->241|PF00528|2e-04|31.2|112/195|BPD_transp_1| HM:PFM:NREP 1 HM:PFM:REP 105->277|PF00528|2.4e-28|26.3|171/185|BPD_transp_1| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 1 RP:SCP:REP 130->281|2r6gG1|1e-09|13.8|152/284|f.58.1.1| OP:NHOMO 1462 OP:NHOMOORG 485 OP:PATTERN ---------------------1-1--------11-111111112311-1111-1-------------1 -1--3--1113---433----2---A------24447754-314311--11-412111--11--4335143-111---1--12---------------------------1111111111-----1---1------11122---131-2222323341-----32-3421-1-----------111-----1-23333334433433346111113321-21---------28-11111111111111----1----11---------21--1-11----------111------------------------111---111--1235----11-1-12377----1131-1----87-42-1--4111--11---122------54DFO-358229344434343436-BAD96999381-G99664667754HA---3171633422222222221-1-41-1-----------------------------1--1-13FDB428999222221777722221273I9695-1553234--5632EA151153411----------1221241221-111--2115--2-3--22121913-211-----------------1-----2-1-111-1-2---------------------1-21-------4344-332222222222-222222221222222222258566-------------------41122122--133333313333---------------11-1-1----111----14443413--19665556664357353443---------11111-----111--1-2--------------3-------------------------------------------1----1-1---- -------------------------------------------------------------------------------------------------------------------------------------------------------------------3---------------------2--2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 75 STR:RPRED 26.1 SQ:SECSTR #############################################################################################################################################HHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHH####################################################################### DISOP:02AL 1-6, 8-31, 285-287| PSIPRED ccccccccHHccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc //