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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56676.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  24/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.38.1
:424 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  245->296 1pv6A  f.38.1.2 * 6e-05 19.2 %
:HMM:SCOP  1->395 1pv7A_ f.38.1.2 * 7.9e-46 27.6 %
:HMM:PFM   31->193 PF07690 * MFS_1 1.6e-19 29.0 162/353  
:HMM:PFM   223->404 PF07690 * MFS_1 1.5e-18 26.0 181/353  
:PROS 336->348|PS00213|LIPOCALIN
:PROS 271->287|PS00216|SUGAR_TRANSPORT_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56676.1 GT:GENE BAD56676.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2002615..2003889 GB:FROM 2002615 GB:TO 2003889 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56676.1 LENGTH 424 SQ:AASEQ MSVDRATESATGTVRSVRLRSLTWSVFVPMALYGTGAGAAAPMYALRALDLGASAGLAGLVVSLSGLGMVLTDLPAGRVVARVGERGAIGLGSLLGLAGVLAAILAPNLAVLAAGMLLNGAAGAVWGLARQSYLVAVVSPGDRGRALSTLAGAHRLGFFCGPFLGAGLVHVMGPNGGLWLQCVTTLLAGLAMVAVRDVGGEGGTHTLSSVVVENRRLLGTLGSAALLTGAARAARQALLPLWAAHIGLSPVATSLIFGIAGAVDVLMSYPAGIWLDRYGRRATGIPSMLCFALGYAALPFTGSALTAGAAAVLLGLANGISNGLIMTVGADVAPPDRRAEFLGAWRLTHDIGMFAGPVAVGAISALAVLGAASFALALAAGAGAWTMYRWFPAGRAAVDRPRPDSGRTRLLSGRGCRAGAVRPR GT:EXON 1|1-424:0| PROS 336->348|PS00213|LIPOCALIN|PDOC00187| PROS 271->287|PS00216|SUGAR_TRANSPORT_1|PDOC00190| TM:NTM 9 TM:REGION 20->42| TM:REGION 51->73| TM:REGION 97->119| TM:REGION 154->176| TM:REGION 178->200| TM:REGION 251->273| TM:REGION 282->304| TM:REGION 311->333| TM:REGION 357->379| SEG 45->71|alraldlgasaglaglvvslsglgmvl| SEG 87->106|gaiglgsllglagvlaaila| SEG 108->125|nlavlaagmllngaagav| SEG 215->244|rrllgtlgsaalltgaaraarqallplwaa| SEG 302->319|gsaltagaaavllglang| SEG 365->384|alavlgaasfalalaagaga| HM:PFM:NREP 2 HM:PFM:REP 31->193|PF07690|1.6e-19|29.0|162/353|MFS_1| HM:PFM:REP 223->404|PF07690|1.5e-18|26.0|181/353|MFS_1| RP:SCP:NREP 1 RP:SCP:REP 245->296|1pv6A|6e-05|19.2|52/417|f.38.1.2| HM:SCP:REP 1->395|1pv7A_|7.9e-46|27.6|380/417|f.38.1.2|1/1|MFS general substrate transporter| OP:NHOMO 24 OP:NHOMOORG 24 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1111----1111-11-111-1111---1---------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111-----------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-5, 8-10, 196-213, 422-424| PSIPRED ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHccccccccccccc //