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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56689.1
DDBJ      :             putative penicillin-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  513/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.17.4e.3.1
:582 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   278->552 3eqvB PDBj 5e-07 28.1 %
:RPS:PDB   244->559 3dwkB PDBj 2e-34 17.2 %
:RPS:SCOP  59->129 1mwrA1  d.17.4.5 * 5e-08 17.6 %
:RPS:SCOP  288->554 1mwrA3  e.3.1.1 * 3e-43 19.8 %
:HMM:SCOP  30->129 1vqqA1 d.17.4.5 * 9.6e-06 23.0 %
:HMM:SCOP  287->577 1qmeA4 e.3.1.1 * 1.8e-59 33.8 %
:RPS:PFM   59->130 PF05223 * MecA_N 3e-05 33.3 %
:RPS:PFM   307->552 PF00905 * Transpeptidase 1e-18 38.0 %
:HMM:PFM   308->572 PF00905 * Transpeptidase 1.8e-47 32.1 265/304  
:HMM:PFM   29->130 PF05223 * MecA_N 4.9e-12 30.7 101/118  
:BLT:SWISS 275->552 PBPA_MYCS2 3e-20 37.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56689.1 GT:GENE BAD56689.1 GT:PRODUCT putative penicillin-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2015255..2017003 GB:FROM 2015255 GB:TO 2017003 GB:DIRECTION + GB:PRODUCT putative penicillin-binding protein GB:PROTEIN_ID BAD56689.1 LENGTH 582 SQ:AASEQ MGTQRNKLFVLVAAPVLALAACSSGPEQPRTVAEQFADALNADDVAAAAALTDNPDQATATLNQLYAGLGKEVTYEVRGTEGDTFTLAATWKLGSAGQEWTYTTTGTAAENGDWAIRWNPATLAPGLDKGPLSYGPAYARPARVLDAAGGELMTEQIVTLVNLTAEADTAAVAALLNPLAPGITDASLRADIAAAQGKPVTAITLRAADIAPIRDALAALPGVTLAPQTRLLTTDKALTSPTLSGLAELWQQQADEAAGWAVRAQTPSGTERIAGAEPRPTADIVTTLDVGLQRAAEAALAPMDKPAAIVALQPSTGNVLAVAQNSAADAQGPIALTGLYPPGSTFKTVTVSAALQAGEVTPDTVVACPGSANIEGRRIPNDDNFDLGQVPLHTAFARSCNTTMGMLGVRLPADGLTHAAAQLGLGIDYVTPGLTTVTGKVPAADSPAARVESSIGQGQVTASPFGMALVAASIARGSVPAPAIVAGRPGTPDRQPDPLPAGVAEQLRTMMRETVTGGTATELADIPGLVGKTGTAEYIDDTHAHGWFVGIAGDLAFAVFAEDAGSSAPAVAAAGRMLRVSQ GT:EXON 1|1-582:0| BL:SWS:NREP 1 BL:SWS:REP 275->552|PBPA_MYCS2|3e-20|37.1|275/491| SEG 10->21|vlvaapvlalaa| SEG 37->58|adalnaddvaaaaaltdnpdqa| SEG 163->181|ltaeadtaavaallnplap| SEG 561->575|aedagssapavaaag| BL:PDB:NREP 1 BL:PDB:REP 278->552|3eqvB|5e-07|28.1|263/425| RP:PDB:NREP 1 RP:PDB:REP 244->559|3dwkB|2e-34|17.2|302/621| RP:PFM:NREP 2 RP:PFM:REP 59->130|PF05223|3e-05|33.3|72/118|MecA_N| RP:PFM:REP 307->552|PF00905|1e-18|38.0|237/289|Transpeptidase| HM:PFM:NREP 2 HM:PFM:REP 308->572|PF00905|1.8e-47|32.1|265/304|Transpeptidase| HM:PFM:REP 29->130|PF05223|4.9e-12|30.7|101/118|MecA_N| GO:PFM:NREP 3 GO:PFM GO:0046677|"GO:response to antibiotic"|PF05223|IPR007887| GO:PFM GO:0008658|"GO:penicillin binding"|PF00905|IPR001460| GO:PFM GO:0009273|"GO:peptidoglycan-based cell wall biogenesis"|PF00905|IPR001460| RP:SCP:NREP 2 RP:SCP:REP 59->129|1mwrA1|5e-08|17.6|68/106|d.17.4.5| RP:SCP:REP 288->554|1mwrA3|3e-43|19.8|258/330|e.3.1.1| HM:SCP:REP 30->129|1vqqA1|9.6e-06|23.0|100/0|d.17.4.5|1/1|NTF2-like| HM:SCP:REP 287->577|1qmeA4|1.8e-59|33.8|287/0|e.3.1.1|1/1|beta-lactamase/transpeptidase-like| OP:NHOMO 891 OP:NHOMOORG 514 OP:PATTERN -------------------------------------------------------------------- 2232622333343333344-443334444443444455663555334111112232231122313336865111111123414-1111--1--------1--11-1--1----------------1111111112121143----22222113222221122221232232-211---2-12-111--1111-111111111-1111112111-111-11-1---1--11131-------------------11---11---------211-----------------------------------------------------2221---1111111221113231121-42212332341111244411--32-4222-----1211111111111------------22222211--2----1112112332111211122221121111111121111111-----------111--11111111-1111-22222----11111112333311123332121112111--22211222222122111112111--------112211221212-112112224213322133234-11---------------------11--33---121-21-11111111122211211111----212--------------------------------------------------1----------------1------------------------1-----111132221-----------1---2222222111121111222211111---1---------11-------------23111111111111--21111111111-1--1-1--------------------------11---1-111121 ------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 317 STR:RPRED 54.5 SQ:SECSTR ###################################################################################################################################################################################################################################################ccccccccGGGHHHHHHHHHHHTTcGccccHHHHTTcccEEEEcccHHHHHHHHHHHHHcTEEEEEEEEETTTccEEEEEccTTccTTTccTTTccEEcGGGGHHHHTHHHHHHccccTTcEEEccccccccccccccTTcccccEEEHHHHHHTTcHHHHHHHHHHHHHHccTTHHHHHHHHTTccccccccHHHcccccGGcccccTTHTTcTTcEEcHHHHHHHHHHHTTTcEEEccccEEEEEcccccEEcccHHHHHHHHHHHHTTccTTcTTTTcccccccEEEEEEEccTTHHHEEEEEEEcccEEEEEE###################### DISOP:02AL 1-4| PSIPRED cccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEEEEEcccccEEEcccEEEEEEccccEEEEcccccccccccccEEEEEccccccEEEEccccEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHcccEEEcccHHHHcccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHcccccccccEEEEEEcHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEcccccccEEEEEEEEccccHHHHHHHHHHHHHccccccccEEEcccEEEEccEEEccccccccccccHHHHHHHHccHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccEEcHHHHHHHHHHHHcccEEccEEEEEEccccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEcEEEccccccccEEEEEEcccEEEEEEEEEccccccHHHHHHHHHHccc //