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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56717.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  383/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.93.1
:358 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   33->356 2lbpA PDBj 3e-31 28.5 %
:RPS:PDB   31->311 3ckmA PDBj 7e-23 12.9 %
:RPS:SCOP  33->358 1usgA  c.93.1.1 * 2e-48 28.0 %
:HMM:SCOP  29->358 2livA_ c.93.1.1 * 9.7e-62 31.2 %
:RPS:PFM   52->322 PF01094 * ANF_receptor 2e-22 31.1 %
:HMM:PFM   51->337 PF01094 * ANF_receptor 1.6e-25 20.7 285/348  
:BLT:SWISS 33->356 LIVK_SALTY 2e-30 27.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56717.1 GT:GENE BAD56717.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2041609..2042685 GB:FROM 2041609 GB:TO 2042685 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56717.1 LENGTH 358 SQ:AASEQ MDLEGREVPKTDPAQAADPAGTGSATCPPGTAIAMAGALTGPDAALGINIVNGVKLALDKHNQANPGCRIELKQFDTEGDPQKATQVIPQIVNDRSIIGLVGPAFSGETKATGQILSDAGLAALTSSATNATLTQNGWTSFFRGLANDDVQGPSVAKYLVNTANYKKVCVVQDNTDYGVGLANSVTAGLGAAADPGCAASIKKGDKDFSATVTKIAAAKPDAVFFAGYYAEGAPLAQQLKSGGVDAVFVGPDGVNDPQFIAQAGSAAKGATLTCPCGPAPEQFAKDYEALNGQAPGVYSVEAYDLATILAKGIDSGKVTRPDLLEFVRSYDGPGLARQYKWSPDGELANAQIWIYEVE GT:EXON 1|1-358:0| BL:SWS:NREP 1 BL:SWS:REP 33->356|LIVK_SALTY|2e-30|27.9|323/369| SEG 116->134|lsdaglaaltssatnatlt| BL:PDB:NREP 1 BL:PDB:REP 33->356|2lbpA|3e-31|28.5|323/346| RP:PDB:NREP 1 RP:PDB:REP 31->311|3ckmA|7e-23|12.9|263/309| RP:PFM:NREP 1 RP:PFM:REP 52->322|PF01094|2e-22|31.1|270/319|ANF_receptor| HM:PFM:NREP 1 HM:PFM:REP 51->337|PF01094|1.6e-25|20.7|285/348|ANF_receptor| RP:SCP:NREP 1 RP:SCP:REP 33->358|1usgA|2e-48|28.0|325/345|c.93.1.1| HM:SCP:REP 29->358|2livA_|9.7e-62|31.2|327/344|c.93.1.1|1/1|Periplasmic binding protein-like I| OP:NHOMO 895 OP:NHOMOORG 388 OP:PATTERN ---------------------1------1-----------------------------------1--- ----2---------1------1---1------11111---13321------------111212-1--11211---1111---1--------------------------------------------1-11--3--11111---21-------11-----------1----------------3321111-----------------------------111---------31------------------------11-----11--11---11----1-11---11111111111111-------------1111111111211-41111111-1---11----1----4--52111362--1----2-121-------1111-24431121211123332332333-1151151224--42223253222333--------11-2---------2----224-----------------------------------48766BADBDB45554CCA8666646CB83533-32244-322556457122----43----------222145-11424622222121--3---22222115---1-222222----------11----111-1--------------------------------------3121-312222222222-22222222222222222224441111-2222222222212121322222221-111111111111---------------2-1-------------------------2-22222322122221222----------------------------------------1---------------1---------------------------311--14111-2- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 333 STR:RPRED 93.0 SQ:SECSTR ########################EEEccEccEEEEEccccTTHHHHHHHHHHHHHHHTHHHHHccTccccEEEEETTccHHHHHHHHHHHHHTTTccEEEccccHHHHHHHHHcGGGGTTEEEEccccTTccccTTETTEEEccccHHHHHHHHHHHHHHHHTTccccEEEEccHHHHHHHHHHHHHHGHHHHccccEEEEEccTTHHHHHHHHccTTccEEEEcccHHHHHHHHHHTTTcTTcEEEEcGGGccHHHHTcHHHHHHTTcEEEEcGGGGcccHHHHHHHHTTTcHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHHHHcccccTTccccccccTTcccccccEEEEEE# DISOP:02AL 358-359| PSIPRED ccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHcccEEEEEccccccccccccccEEEEcccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccEEEEEEccccccccccEEEEEEc //