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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56718.1
DDBJ      :             putative branched-chain amino acid transporter permease protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  327/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:337 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   23->74 PF02653 * BPD_transp_2 7e-06 44.2 %
:HMM:PFM   25->320 PF02653 * BPD_transp_2 1.4e-47 30.9 259/267  
:BLT:SWISS 17->329 LIVH_SALTY 4e-24 42.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56718.1 GT:GENE BAD56718.1 GT:PRODUCT putative branched-chain amino acid transporter permease protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2042794..2043807 GB:FROM 2042794 GB:TO 2043807 GB:DIRECTION + GB:PRODUCT putative branched-chain amino acid transporter permease protein GB:PROTEIN_ID BAD56718.1 LENGTH 337 SQ:AASEQ MVSLVASSIDFNYQDVFDQFWRLTVDGVTYGSIYALVAVGYTLVYGVLRLINFAHSEIFMLGMFGQLVGLMIFGFSAGPDVYDQGVVLTVVYLGLAMVVGMVVSGGAAVGLERVAYRPLRRRGAKPLAFLITAIGMSFVLQEFVHFILPKIDPDLGGTNAQQPIQLVEPTVQFSFGGADVTNIAILIVVAAVVLALATEMLINRTKFGRGIRAVAQDPDTATLMGVSRERVIMLTFLIGGLLAGAAATLYAIKIPPAIIYSGGFILGIKAFAAAVLGGIGNLRGALLGGLLLGIVEQYGQILLGIEWRDVVAFVVLVAVLMVRPTGILGESLGKARA GT:EXON 1|1-337:0| BL:SWS:NREP 1 BL:SWS:REP 17->329|LIVH_SALTY|4e-24|42.2|294/308| TM:NTM 7 TM:REGION 44->66| TM:REGION 88->110| TM:REGION 128->150| TM:REGION 180->202| TM:REGION 230->252| TM:REGION 258->280| TM:REGION 307->329| SEG 90->111|vvylglamvvgmvvsggaavgl| SEG 183->197|iailivvaavvlala| SEG 234->252|ltfliggllagaaatlyai| SEG 276->293|lggignlrgallgglllg| SEG 310->322|vvafvvlvavlmv| RP:PFM:NREP 1 RP:PFM:REP 23->74|PF02653|7e-06|44.2|52/271|BPD_transp_2| HM:PFM:NREP 1 HM:PFM:REP 25->320|PF02653|1.4e-47|30.9|259/267|BPD_transp_2| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF02653|IPR001851| GO:PFM GO:0006810|"GO:transport"|PF02653|IPR001851| GO:PFM GO:0016020|"GO:membrane"|PF02653|IPR001851| OP:NHOMO 415 OP:NHOMOORG 329 OP:PATTERN ------------------------1------------------------------------------- ----1---------1------1---1------11111---11111------------21111--1--111--------1---1------------------------------------------------------111-----1---------------------11-----------------1111-----------------------------111---------2-------------------------11-----11--11----1----1111---11111111111111-------------11111111111-1-3------------11---------2--12---322--11---1-11--------1--1--2111111111111111111111------1-111--31111222111121---------------------2----111-----------------------------------12212111111-----22111111-11222232-1111111222-1122122----1-----------111124-114244233321-1--1---11111-13---1-111111----------11----111-1--------------------------------------2121-211111111111-11111111111111111113331111-111111111111111131111111--111111111111---------------1---------------------------2-22221221122221222----------------------------------------1-------------------------------------------111--11111--- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-2, 332-337| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHccc //