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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56724.1
DDBJ      :             putative thioredoxin
Swiss-Prot:             

Homologs  Archaea  25/68 : Bacteria  710/915 : Eukaryota  156/199 : Viruses  0/175   --->[See Alignment]
c.47.1
:124 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->103 1rqmA PDBj 1e-16 40.2 %
:RPS:PDB   4->103 2e0qA PDBj 1e-17 31.0 %
:RPS:SCOP  7->100 1hyuA4  c.47.1.2 * 4e-18 13.3 %
:HMM:SCOP  7->103 2trcP_ c.47.1.6 * 1.1e-31 38.5 %
:RPS:PFM   7->96 PF00085 * Thioredoxin 7e-14 41.1 %
:HMM:PFM   3->101 PF00085 * Thioredoxin 4.8e-28 35.4 99/104  
:BLT:SWISS 2->103 THIO_ALIAC 5e-16 40.2 %
:PROS 22->40|PS00194|THIOREDOXIN_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56724.1 GT:GENE BAD56724.1 GT:PRODUCT putative thioredoxin GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2052557..2052931) GB:FROM 2052557 GB:TO 2052931 GB:DIRECTION - GB:PRODUCT putative thioredoxin GB:PROTEIN_ID BAD56724.1 LENGTH 124 SQ:AASEQ MATQTLTQQNFDEVVTGNDVVLVDFWAEWCGPCRSFAPTYEASSDKHPDVVHGKVDTEAEQALAAAANIRSIPTIMAFREGVLVFAQPGALPPAALEDLVTQVKALDMDEVRKQLAEQQQGAAE GT:EXON 1|1-124:0| BL:SWS:NREP 1 BL:SWS:REP 2->103|THIO_ALIAC|5e-16|40.2|102/105| PROS 22->40|PS00194|THIOREDOXIN_1|PDOC00172| SEG 58->67|eaeqalaaaa| BL:PDB:NREP 1 BL:PDB:REP 2->103|1rqmA|1e-16|40.2|102/105| RP:PDB:NREP 1 RP:PDB:REP 4->103|2e0qA|1e-17|31.0|100/104| RP:PFM:NREP 1 RP:PFM:REP 7->96|PF00085|7e-14|41.1|90/103|Thioredoxin| HM:PFM:NREP 1 HM:PFM:REP 3->101|PF00085|4.8e-28|35.4|99/104|Thioredoxin| GO:PFM:NREP 1 GO:PFM GO:0045454|"GO:cell redox homeostasis"|PF00085|IPR013766| RP:SCP:NREP 1 RP:SCP:REP 7->100|1hyuA4|4e-18|13.3|90/96|c.47.1.2| HM:SCP:REP 7->103|2trcP_|1.1e-31|38.5|96/0|c.47.1.6|1/1|Thioredoxin-like| OP:NHOMO 1482 OP:NHOMOORG 891 OP:PATTERN ------2322222221-1-----2-42-2-1------------11-1111-----------1----22 1113422211112222234-32224233333453332246211122113211223132--22222313223111111111-1311222111212111--11111-2111211111111111111-221312222321112211231311311111222222211111223311111111111122222--12-1---------------1111-1---1111111------2-1--------------1--111121--1-111--11--211211--------------------------------------11---111-1-1--11111111111----12-111-111111111--1--222211-11211122111111-11121112112111111111112-11212112211-1111111111112122122222222121111111111111121--------11----11---------1-11-122312111211111211111221111111211112111132211232122222111242122-------1-222221-111221211111111111111443442112111111111111111111121223442212223221222222121222212112111-1121311-11122221222222222122-2222222222222222222222221112222222222222222222222221-222222222222-1112222222223-41211111111111-11121212122222222123222232322122111-111114222222222222222223333222-1-12331111111----------------------11------1----------------11 11---42-21--44121-111113141221---11-1111111-111133622312212112-221---21221222212-111--11-3221233222-1--243-37251511131-1111111---241-1-411--11-11-11--11-1211122121531--1--47422111J231126116-44114322- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 124 STR:RPRED 100.0 SQ:SECSTR TccEEccTTTHHHHHHHccEEEEEEEcTTcHHHHHHHHHHHHHHHHcTTcEEEEEETTTcHHHHHHTTcccccEEEEEETTEEEEEEEccccHHHHHHHHHHHHHccccccEEEcccGGGcccH DISOP:02AL 105-124| PSIPRED ccEEEEcHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHcccccccEEEEEEccEEEEEEEccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccc //