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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56725.1
DDBJ      :             putative isocitrate dehydrogenase
Swiss-Prot:             

Homologs  Archaea  60/68 : Bacteria  775/915 : Eukaryota  188/199 : Viruses  0/175   --->[See Alignment]
c.77.1
:360 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->353 1x0lA PDBj 5e-48 41.4 %
:RPS:PDB   7->357 1dr8A PDBj 1e-71 35.8 %
:RPS:SCOP  1->357 1ai2A  c.77.1.1 * 8e-65 26.1 %
:HMM:SCOP  5->357 1pb1A_ c.77.1.1 * 1.3e-103 47.1 %
:RPS:PFM   9->353 PF00180 * Iso_dh 4e-57 45.2 %
:HMM:PFM   10->353 PF00180 * Iso_dh 5.2e-88 43.9 330/347  
:BLT:SWISS 8->304 LEU3_SULSO 7e-47 40.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56725.1 GT:GENE BAD56725.1 GT:PRODUCT putative isocitrate dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2053142..2054224 GB:FROM 2053142 GB:TO 2054224 GB:DIRECTION + GB:PRODUCT putative isocitrate dehydrogenase GB:PROTEIN_ID BAD56725.1 LENGTH 360 SQ:AASEQ MSDAKAVRLGLIDGDGIGPEVVRATRAVVDEALVAAGGAAVVWVPLLIGHRAIEEYGTPLPQQTLDGLAAVDAWILGPHDNASYPGEHRGAVPPGGAIRKHFDLYANIRPARALPGVRAAAPDIDLVIVRENSEGFYADRNMVAGSGEFQPSIDLAMAVAVVSRQATERIAHEAFRLAQTRRKKVTIVHKANVLPRTMGLFRDVCYEVAASYPGVVVDDEHVDAAAAHLVRAPGDYDVVVTENLFGDILSDLAGQLSGSLGTAASLNCSATRAMAQAVHGAAPDIAGHNRANPVALQCSAAMLLRWLAIRRGESVLSRAAERIERAVAATFAAGIATADLGGQASTAEFTEQVCARVHRR GT:EXON 1|1-360:0| BL:SWS:NREP 1 BL:SWS:REP 8->304|LEU3_SULSO|7e-47|40.5|279/336| SEG 27->44|avvdealvaaggaavvwv| SEG 215->228|vvvddehvdaaaah| SEG 318->338|raaerieravaatfaagiata| BL:PDB:NREP 1 BL:PDB:REP 6->353|1x0lA|5e-48|41.4|319/333| RP:PDB:NREP 1 RP:PDB:REP 7->357|1dr8A|1e-71|35.8|335/344| RP:PFM:NREP 1 RP:PFM:REP 9->353|PF00180|4e-57|45.2|321/338|Iso_dh| HM:PFM:NREP 1 HM:PFM:REP 10->353|PF00180|5.2e-88|43.9|330/347|Iso_dh| GO:PFM:NREP 4 GO:PFM GO:0000287|"GO:magnesium ion binding"|PF00180|IPR001804| GO:PFM GO:0016616|"GO:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"|PF00180|IPR001804| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF00180|IPR001804| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00180|IPR001804| RP:SCP:NREP 1 RP:SCP:REP 1->357|1ai2A|8e-65|26.1|352/414|c.77.1.1| HM:SCP:REP 5->357|1pb1A_|1.3e-103|47.1|342/0|c.77.1.1|1/1|Isocitrate/Isopropylmalate dehydrogenase-like| OP:NHOMO 2466 OP:NHOMOORG 1023 OP:PATTERN 11-2--2222222222-2222222211121222222222222222222323332221-1--2112-22 4443111111111221111-111113111111133322531111211-1111121111--111-13411111111111-22-422121222212---11--2-1121131--------------111111111121222222224322322222222222221122222321222221222213333311142322222222322222243333322232433112222223212222222222222222222-------2------------11-221-------222-1111111111-------------222222222-23-21111111111122111---2-11-411222211222-221112--32221111-1--1117441132222111111111111-23422433222-3222225424221111131241342112222222253322221111111111111111111111111111111131113543445554433333554533331333745531222553444444774333222212111111122223312321222222222-111111132222234131111111111-1111111111211122332221312212222222222222222222-1-2532-11--132332223332322233-3323322333323333333344222322222222222222222233322231-233333333333111111111222224232111113-111-2112333331212111222233232232323431-1--1---111121111111111222222222222222211112222-------------------------------------22--1-111212 ----225-2---3346755778688876645555555555455444546677676663444433444434425442433344444424-46474456564416667-3234583333223127333232Eb6-5452233823642233332165313436424332A3764453333191112374985931121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 360 STR:RPRED 100.0 SQ:SECSTR EEccEEcEEEEEEEcTTHHHHHHHHHHHHHHHHHHHccccEEEEEcccTHHHHHHHcccccHHHHHHHHHcccEEEEEcccGGGTTccGGGcHHHHHHHHHTTEEEEEEEEEccTTcGGGccTcEEEEEEEcccGGGTcccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHTTcEEEEEEcTTTcTHHHHHHHHHHHHHHTTcTTcEEEEEEHHHHHHHHHHcGGGccEEEEcHHHHHHHHHHHHHTTccGGGcccEEEEccccEEcccccccTTTTTTTcccTHHHHHHHHHHHHHTTccHHHHHHHHHHHTTHHHHHHHHHHHcccGGGccccTHHHHHHHHHHTcTTc DISOP:02AL 1-4| PSIPRED ccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHcccccHHHHHHHHHccEEEEcccccccccccccccccHHHHHHHHHccEEEEEEEEEccccccccccccEEEEEcccccEEccccEEcccccccccccEEEEEEEEcHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHcHHHHHcccEEcccEEEEEEcccccHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHHHcc //