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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56728.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  137/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13g.51.1
:431 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   139->182 1or7B PDBj 1e-04 40.9 %
:RPS:PDB   66->185 3dxjF PDBj 5e-07 8.8 %
:RPS:SCOP  117->222 1adtA3  g.51.1.1 * 1e-14 14.8 %
:HMM:SCOP  12->86 1h3lA_ a.177.1.1 * 4.6e-14 30.7 %
:HMM:SCOP  121->182 1or7A1 a.4.13.2 * 2.2e-09 32.3 %
:HMM:PFM   30->90 PF04542 * Sigma70_r2 1.2e-13 31.1 61/71  
:HMM:PFM   133->182 PF08281 * Sigma70_r4_2 1.2e-12 30.0 50/54  
:HMM:PFM   386->416 PF07719 * TPR_2 0.00012 29.0 31/34  
:BLT:SWISS 60->419 Y370_RHIME 8e-45 39.7 %
:PROS 45->76|PS01063|SIGMA70_ECF
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56728.1 GT:GENE BAD56728.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2055955..2057250 GB:FROM 2055955 GB:TO 2057250 GB:DIRECTION + GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD56728.1 LENGTH 431 SQ:AASEQ MTGSDDGTRTGSDESVRRSVAAVWRIESARIVATLTRAVGDFALAEDLAQEALADALAQWPRTGVPANPGAWLTTVAKRKAIDGWRRQERYDERLAMFARDLAAEEAAAVGAGAPLPWDPDDIGDDVLRLLFVSCHPVLSREAQVALTLRVVGGLTSEEIARAFLVPTATVQQRIVRAKKTLAAAKVPFAVPGRAEFGDRLSGVLGVLYLVFNEGHAAGSGEEWMRPDLSREALRLGRALAELVPDEPEVHGLVALMELTAARFPARIGPDGEPVLLADQDRSRWDRSRILRGQAALARADALGRGRGAYGLQAAIAETHALAPSVAETDWDRIVLLYEALGRLAPSPIVELNRAVAVSMAAGPAAALRIVDGLLGTAALARYHYLHAARAELLGQLGRTGEARAEYESALRLAGNAGERALLRRKLAALD GT:EXON 1|1-431:0| BL:SWS:NREP 1 BL:SWS:REP 60->419|Y370_RHIME|8e-45|39.7|353/423| PROS 45->76|PS01063|SIGMA70_ECF|PDOC00814| SEG 43->59|alaedlaqealadalaq| SEG 103->114|aaeeaaavgaga| SEG 229->243|lsrealrlgralael| SEG 291->315|lrgqaalaradalgrgrgayglqaa| SEG 355->367|avavsmaagpaaa| SEG 378->391|aalaryhylhaara| SEG 420->430|rallrrklaal| BL:PDB:NREP 1 BL:PDB:REP 139->182|1or7B|1e-04|40.9|44/164| RP:PDB:NREP 1 RP:PDB:REP 66->185|3dxjF|5e-07|8.8|113/349| HM:PFM:NREP 3 HM:PFM:REP 30->90|PF04542|1.2e-13|31.1|61/71|Sigma70_r2| HM:PFM:REP 133->182|PF08281|1.2e-12|30.0|50/54|Sigma70_r4_2| HM:PFM:REP 386->416|PF07719|0.00012|29.0|31/34|TPR_2| RP:SCP:NREP 1 RP:SCP:REP 117->222|1adtA3|1e-14|14.8|81/126|g.51.1.1| HM:SCP:REP 12->86|1h3lA_|4.6e-14|30.7|75/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 121->182|1or7A1|2.2e-09|32.3|62/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 242 OP:NHOMOORG 140 OP:PATTERN -------------------------------------------------------------------- -23-A---------211-------12------23337357-213-9------2-11-2--343-313324------------------------------11----13-1--------------------------------------------------------1--1------------------------------------------------------1-------2--------------------------------------------------------------------------------------------------------------------------------------------2-21222------1322---1-111-----------------1--14--3---43123211111----------1---------------1---------------------------------11-----1111111-111111221111-1111--------111-----112-----------------------------------------------111132---------------------------------11-----------------------2---------------------------------------------------------------------------------------------------------------1----------------------------111111111111111---------------------------11-1-11-----------11---------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------1--------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 113 STR:RPRED 26.2 SQ:SECSTR #################################################################cccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHH#######HHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHH###################################################################################################################################################################################################################################################### DISOP:02AL 1-9, 430-431| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccEEEccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcc //