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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56730.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  62/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:445 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   26->94 3hqkD PDBj 2e-04 31.8 %
:BLT:PDB   209->330 3giaA PDBj 4e-07 24.6 %
:RPS:PFM   209->318 PF00324 * AA_permease 3e-05 30.9 %
:HMM:PFM   24->382 PF00324 * AA_permease 2.6e-36 26.3 357/479  
:BLT:SWISS 27->101 YECA_BACSU 4e-05 33.3 %
:BLT:SWISS 212->332 Y093_RHIME 8e-09 33.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56730.1 GT:GENE BAD56730.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2058154..2059491 GB:FROM 2058154 GB:TO 2059491 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56730.1 LENGTH 445 SQ:AASEQ MRRGIRPGMPMTLKRVVRTPLLYFFILGDVLGAGVYVLVGQIAAASGGAVWVPLLTALVLACLTAGSYAELATRFPRAGGSAHYVTLAFGPAAGSFIGFCMLAAGVVSVGALARGFASDYLAELVTLPTVVVVVVFLLALAALNLRGIKESLGANVAATAVELGGLLLVIGLGTWVLVRGDGDPGRLTQLGTAEQGVVGATLAGAVLAYYSFVGFETSVNLAEEVSDPRRTYPRALFGALLTAGAVYVAIGVVAAAAVPTDVLANSTGPLLEVVRVAGGVPERLFAVIALVAVANGALLTGIMASRLAYGMARDGLLPAALGRVLAVRRTPWVAILSTSAVSLVLALTGEVAALAATLVLLLLVVFGAVNIAVLILRREPATGDHFRVPTVVPWLGLASCLFLFTRIEAEVWVRGAVLLGLGLALGAVNAVRGRVRARREPEPVG GT:EXON 1|1-445:0| BL:SWS:NREP 2 BL:SWS:REP 27->101|YECA_BACSU|4e-05|33.3|75/424| BL:SWS:REP 212->332|Y093_RHIME|8e-09|33.1|118/465| TM:NTM 12 TM:REGION 18->40| TM:REGION 46->68| TM:REGION 87->109| TM:REGION 123->145| TM:REGION 156->178| TM:REGION 190->211| TM:REGION 237->259| TM:REGION 278->300| TM:REGION 330->352| TM:REGION 355->376| TM:REGION 386->408| TM:REGION 411->432| SEG 54->65|lltalvlaclta| SEG 102->113|laagvvsvgala| SEG 121->143|laelvtlptvvvvvvfllalaal| SEG 161->178|velgglllviglgtwvlv| SEG 196->208|gvvgatlagavla| SEG 243->258|agavyvaigvvaaaav| SEG 333->369|vailstsavslvlaltgevaalaatlvllllvvfgav| SEG 413->444|vrgavllglglalgavnavrgrvrarrepepv| BL:PDB:NREP 2 BL:PDB:REP 26->94|3hqkD|2e-04|31.8|66/419| BL:PDB:REP 209->330|3giaA|4e-07|24.6|122/433| RP:PFM:NREP 1 RP:PFM:REP 209->318|PF00324|3e-05|30.9|110/429|AA_permease| HM:PFM:NREP 1 HM:PFM:REP 24->382|PF00324|2.6e-36|26.3|357/479|AA_permease| GO:PFM:NREP 3 GO:PFM GO:0006810|"GO:transport"|PF00324|IPR004841| GO:PFM GO:0016020|"GO:membrane"|PF00324|IPR004841| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00324|IPR004841| OP:NHOMO 84 OP:NHOMOORG 68 OP:PATTERN ----------------1---------------------------------111--------------1 ----2----------------2---3------22221111---11121-23-2-11------1-121--1------------1--------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------1-----------------------2---------------------------------------------------1------1-------------------------------------------------------1-1111-11111----111111---2-1----------------------------------------------------------------------------------------------1---------------------1------1--1-------1--------------------------------------------------------------------------------------------------1111--------------------------------------1--------11------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 188 STR:RPRED 42.2 SQ:SECSTR #########################HHHHHTTcHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH###HHHHHHHcccccccHHHHHHHHccHHH##################################################################################################################GGGGTHHHHHHTTGGGcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHccccccccTTcccccT################################################################################################################### DISOP:02AL 1-16, 440-445| PSIPRED ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHEEcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc //