[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56735.1
DDBJ      :             putative transporter substrate-binding protein
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  595/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:305 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   67->288 2q2cA PDBj 1e-23 36.3 %
:RPS:PDB   67->292 3delB PDBj 4e-37 21.8 %
:RPS:SCOP  64->288 1ii5A  c.94.1.1 * 4e-36 26.2 %
:HMM:SCOP  13->292 2a5sA1 c.94.1.1 * 1.6e-55 32.1 %
:RPS:PFM   76->288 PF00497 * SBP_bac_3 8e-27 36.0 %
:HMM:PFM   68->289 PF00497 * SBP_bac_3 1.9e-56 37.3 212/225  
:BLT:SWISS 51->288 FLIY_ECOLI 1e-18 25.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56735.1 GT:GENE BAD56735.1 GT:PRODUCT putative transporter substrate-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2063871..2064788 GB:FROM 2063871 GB:TO 2064788 GB:DIRECTION + GB:PRODUCT putative transporter substrate-binding protein GB:PROTEIN_ID BAD56735.1 LENGTH 305 SQ:AASEQ MEGAVSVRSVLGGSAVRAFAAVVGGALVLTGCTTNTEESGPAASKVQVDKVTEIADRLPDKIKQSGKLVVGVNVPYQPNEYRDADGKIVGFDVDLMDAVTAVLGIQAEYVESAFEKIIPAIQAGTYDVGMSSITDSKEREQQVDFTTYFNAGIQWAQQTGKPIDPANACGKRVAVQATTVEHTEEVPAKSAECVAQGKPPIDIKAFDEQSAATNALVQGQVDAMSADSPVTAYAIKQSGGKIEPAGPVFDSAPYGWAVQKGSPLAAVLQAAVNHLIRNGQYKQITENWGVQDGAITESVINGAVS GT:EXON 1|1-305:0| BL:SWS:NREP 1 BL:SWS:REP 51->288|FLIY_ECOLI|1e-18|25.0|232/266| SEG 12->28|ggsavrafaavvggalv| BL:PDB:NREP 1 BL:PDB:REP 67->288|2q2cA|1e-23|36.3|212/231| RP:PDB:NREP 1 RP:PDB:REP 67->292|3delB|4e-37|21.8|216/232| RP:PFM:NREP 1 RP:PFM:REP 76->288|PF00497|8e-27|36.0|203/222|SBP_bac_3| HM:PFM:NREP 1 HM:PFM:REP 68->289|PF00497|1.9e-56|37.3|212/225|SBP_bac_3| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00497|IPR001638| GO:PFM GO:0006810|"GO:transport"|PF00497|IPR001638| GO:PFM GO:0030288|"GO:outer membrane-bounded periplasmic space"|PF00497|IPR001638| RP:SCP:NREP 1 RP:SCP:REP 64->288|1ii5A|4e-36|26.2|210/222|c.94.1.1| HM:SCP:REP 13->292|2a5sA1|1.6e-55|32.1|252/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 2386 OP:NHOMOORG 621 OP:PATTERN 11---1----------1-2221111--11--1------11111---12----1----1---------- ----412111112122211-16--291111117777257812113-31122-645113------424414-53335442-1-1---------------------------11----1--11111--------2------11111--1-13--11111-------21-223-------------2441111--233444445544444442221424442213323233333832112122122221221----32134341423544344152343121222333323333343443334333233333333314465544431234411-11111-13133222212-1-2113144-4121-111111123---111--1--2--725--------5653526656I---2--2-426--IDDD95AGBHBEA4----162122-1311111111322-1--2---------------------------1--------5224IJJJKI59AA9GGCIAAAA68MEN3651--4532211123969A--4----742222222---11-1142475724966633-32-4---22-2---3-2122122212----------22----675-2-----2-111---1---11--111-1-1-1--------76E84A96665664666-6666666566666566558DFB992317657777777777777C66565664-856666665667--3------2111--246222213-1111211-33333-4233-177677BAB658552657----------2333333333342211---------------5------------------------------------------121-112111--- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1-----------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 269 STR:RPRED 88.2 SQ:SECSTR ###################################EcccTTTcEEEEccTEEEcccccccccTcccEEEEEEccccTTTcEEcTTccEEcHHHHHHHHHHHHHTcEEEEEEccGGGHHHHHHTTcccEEcccccccHHHHTTEEEEEEEEEEcEEEEEEEccccccccGcccEEEETTcHHHHHHHcccHHHHHHHHcTTccEEEEccHHHHHHHHHTTcccEEEEcHHHHHHHGGGcTTEEEEccGGGcEEEEEEEEETTcHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGcHHHHHHHTTcE# DISOP:02AL 1-5, 36-43, 304-305| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHccEEEEEEcccccccEEEcccccEEEEHHHHHHHHHHHcccEEEEEEccHHHHHHHHHcccEEEEEccccccHHHHHHccccccccccEEEEEEccccccHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHcccEEEEEEcHHHHHHHHHcccccEEEcccccccccEEEEEEccHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccc //