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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56736.1
DDBJ      :             putative ABC transporter permease
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  698/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:308 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   64->209 3dhwA PDBj 5e-06 29.7 %
:RPS:PDB   180->213 3dhwA PDBj 2e-08 32.4 %
:RPS:SCOP  52->286 2r6gG1  f.58.1.1 * 7e-28 14.9 %
:HMM:PFM   82->281 PF00528 * BPD_transp_1 1.9e-20 25.8 178/185  
:HMM:PFM   29->94 PF11821 * DUF3341 0.00058 27.0 63/173  
:BLT:SWISS 51->283 YCKA_BACSU 2e-28 38.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56736.1 GT:GENE BAD56736.1 GT:PRODUCT putative ABC transporter permease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2064792..2065718 GB:FROM 2064792 GB:TO 2065718 GB:DIRECTION + GB:PRODUCT putative ABC transporter permease GB:PROTEIN_ID BAD56736.1 LENGTH 308 SQ:AASEQ MTGSDDPAVSREPEPIKAVPLRRPGRWIAAGIILVLLGLFVYGAATNEAYQWGTYGRYLFDTRILSGALVTLELTVLAMAIAIVLGTVLAVMRLSPNPVLRSTAWVYLWIFRGTPVFVQLVFWGLFPSLYRQIDLGVPFGPQFFHLDVQGLQAAFAFAVIGLGLNEAAYMAEIVRAGINSVGEGQREASIALGMSWAQTMRRTVLPQAMRVIIPPTGNELIGMLKTTSLVTAIPLSTDLYGRARDIYGVNFQPIPLLLVTATWYLAITSVLMVGQYYLERHYSRGASRQLTAKQLRELADAQKLDAAK GT:EXON 1|1-308:0| BL:SWS:NREP 1 BL:SWS:REP 51->283|YCKA_BACSU|2e-28|38.6|210/226| TM:NTM 5 TM:REGION 26->48| TM:REGION 67->89| TM:REGION 103->125| TM:REGION 147->169| TM:REGION 250->272| SEG 28->39|iaagiilvllgl| BL:PDB:NREP 1 BL:PDB:REP 64->209|3dhwA|5e-06|29.7|128/203| RP:PDB:NREP 1 RP:PDB:REP 180->213|3dhwA|2e-08|32.4|34/203| HM:PFM:NREP 2 HM:PFM:REP 82->281|PF00528|1.9e-20|25.8|178/185|BPD_transp_1| HM:PFM:REP 29->94|PF11821|0.00058|27.0|63/173|DUF3341| RP:SCP:NREP 1 RP:SCP:REP 52->286|2r6gG1|7e-28|14.9|221/284|f.58.1.1| OP:NHOMO 4436 OP:NHOMOORG 732 OP:PATTERN 11--12----------1-1111114--21-2211----1122--2212--1-1----2------2--- ----4313333321411----6--1D------766625C914225182533-769135--2221577B5A4755565521421---------------------------11111111111111-----1--4---122341111-22242233322-1111--1--3322-2222--2222-1341111--27455555875566556623398556333754355555396222222222222222222245757AB875666666A93757B533388886664AA888777888876666566666666767A98777813556564545523234442333312214233199-4132-1111111171--11135444422L68222412222375347567Q-22E22C28DK23lSSNTWRUTeNML9---36K556745C1111111133411-38----------111111111111111--1-5--21-5GEAFNMMMOKB9CCDFFIREDEEADHFY777412A8C95743A8EFLN234----A44422222---24-11K-897C56CAAA32-23-3-------1--5-3341555553222222222-13----88C-3-----C-1111--11111111-11-2---1--------ABJK7CDAAAAAA8AA9-AACAAAAAAAAAA9AA99BGNENL7769897999999999989G99899993-DBBBBBBABBBB--4-222221111--77E44442533223333266556-54553-FDEFHQJS9HHDE5MJK----------777A99999AA97711---------------2----------------31-1----------------------132-115111--1 --------------------------------------------------------------------------------------------------------------------------------------------------------------2----2------1-----------------2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 132 STR:RPRED 42.9 SQ:SECSTR ###############################################################HHHHHHHHHHHHHHHHHHHHHTTGGGGGGcccccccHHHHHHHHHHHHHHccHHHHHHHH#############HHHHHHTTcccc#cHHHH####HHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHH############################################################################################### DISOP:02AL 1-13, 284-308| PSIPRED cccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccc //