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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56738.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  668/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:298 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->200 1iz1B PDBj 2e-09 28.6 %
:RPS:PDB   1->223 1b9nB PDBj 3e-20 10.4 %
:RPS:SCOP  1->102 1b9mA1  a.4.5.8 * 5e-17 11.8 %
:RPS:SCOP  89->295 1i69A  c.94.1.1 * 5e-15 21.8 %
:HMM:SCOP  1->89 1ixcA1 a.4.5.37 * 6.9e-26 46.1 %
:HMM:SCOP  81->296 1uthA_ c.94.1.1 * 1.7e-36 35.8 %
:RPS:PFM   3->61 PF00126 * HTH_1 8e-12 64.4 %
:RPS:PFM   90->223 PF03466 * LysR_substrate 4e-09 36.4 %
:HMM:PFM   87->292 PF03466 * LysR_substrate 2.6e-41 34.2 202/209  
:HMM:PFM   3->61 PF00126 * HTH_1 9.4e-28 62.7 59/60  
:BLT:SWISS 4->223 CYNR_ECOLI 5e-25 34.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56738.1 GT:GENE BAD56738.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2066511..2067407) GB:FROM 2066511 GB:TO 2067407 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56738.1 LENGTH 298 SQ:AASEQ MELRQLRYFVTVAEEGNFTRAAARLHLAQPGLSAQIRSLERELGHPLLDRGGRSVTLTEVGAAVLPHARAALAAAERIAHTADEFAGLLRGHVRMGLISGAATEEFDVAAVLAAFHHDHPQIAISLTEDTSENMLAALLRGELDIALVGLTGAPLDPALGIDVVLDTPIVAAVAATDRDHGETIALAALAGHPLICLTRGTGLRGVFERSCAAAGFTPDVAFEAAAPALLLRLAARGLGIAVVPAIGPAEAAAAGVRTLRITDPEPHGRLALAWRTDQHPAPATKVLLGQLRLALGHG GT:EXON 1|1-298:0| BL:SWS:NREP 1 BL:SWS:REP 4->223|CYNR_ECOLI|5e-25|34.9|215/299| SEG 62->82|aavlpharaalaaaeriahta| SEG 224->255|aaapalllrlaarglgiavvpaigpaeaaaag| BL:PDB:NREP 1 BL:PDB:REP 1->200|1iz1B|2e-09|28.6|196/294| RP:PDB:NREP 1 RP:PDB:REP 1->223|1b9nB|3e-20|10.4|212/245| RP:PFM:NREP 2 RP:PFM:REP 3->61|PF00126|8e-12|64.4|59/60|HTH_1| RP:PFM:REP 90->223|PF03466|4e-09|36.4|129/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 87->292|PF03466|2.6e-41|34.2|202/209|LysR_substrate| HM:PFM:REP 3->61|PF00126|9.4e-28|62.7|59/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->102|1b9mA1|5e-17|11.8|102/122|a.4.5.8| RP:SCP:REP 89->295|1i69A|5e-15|21.8|197/206|c.94.1.1| HM:SCP:REP 1->89|1ixcA1|6.9e-26|46.1|89/0|a.4.5.37|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 81->296|1uthA_|1.7e-36|35.8|212/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 4732 OP:NHOMOORG 673 OP:PATTERN -------------------------------------------------------------------- 462-K1135554-2A6611-15113E1111135676AFQU-9393312-2117642-4--243-94QDGC3-222-1111685111--1111-------116-113-213---------------1--------1-56623---31322533423221111112328645111111111111113111---53C77777786357679651A8A98672327141555654JT11111111111111132217-342552-213772274113--11-1111-----------------------------------1----2-3274222222222215111---3-1--5221179452-11421-1---12124332-----24DBC4267A5588788879779A-67786LAJBD4-NBBE799ONCCCHI14166D44474789899999975555253------------------------------17A32EfWOhZggfgcJHGGFWWceLKLMCNkSiSdgX-2OKC8CBB9jDN5Z96994122B5122221212256B11111131137336-11153513-443277-2--1------------------1--166B55231534474655513586657543553--12446------C6CB4A8BAA8B877AA-AAABB77A9AA8B99AA99KOJBB365C7DAEBEDDDEBCBADH78577784-644455435555--111111123221257E22211222222-2227787958-33H2NNKNLULMBRVRK5BDE---------33333888883447678799994443222--4211---------------------------------------------------71 -------------2------------------------------------------------------------------------------------------------------------------------------------------------3----------------1------------4-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 296 STR:RPRED 99.3 SQ:SECSTR EcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHTTTcHHTTTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEEEcGGGcEcHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGHGGcTTccTTcEEEEccHHHHHHHHHHTccEEEEEGGGccTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTcc## DISOP:02AL 82-88| PSIPRED ccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEcccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEEEEEEcccccccccEEEEEEEcccEEEEEccccccccccccHHHHHcccEEEccccccHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHccHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHccc //