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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56740.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  112/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
d.43.2
:294 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   103->218 3bk6B PDBj 1e-10 15.5 %
:RPS:SCOP  96->218 1winA  d.43.2.1 * 2e-08 16.2 %
:HMM:SCOP  94->233 1winA_ d.43.2.1 * 8.6e-12 29.1 %
:RPS:PFM   70->218 PF01145 * Band_7 2e-06 30.3 %
:HMM:PFM   67->235 PF01145 * Band_7 1.3e-28 32.1 162/179  
:HMM:PFM   11->69 PF01284 * MARVEL 0.00069 25.4 59/144  
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56740.1 GT:GENE BAD56740.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2068889..2069773 GB:FROM 2068889 GB:TO 2069773 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56740.1 LENGTH 294 SQ:AASEQ MKLRPAVHVNGFLVLVAWLVLTLVFGGAAALGYVTGAKDGNVPALVAAIAATVVVVVLALLATGLTVVNPNEAKVVQFFGRYIGSVSEPGFFSVVPLTDRKSISLRVRNFETQKLKVNDADGNPVEIAAVVVYRVVDSFKAAFAVDDYEEYVETQSEAAVRHLATTHPYDAHDVGRTSLRDGTEIAEELTVELRERTEMAGIEVLEARITHLAYAPEIAQAMLVRQQAAQVVAARTHIVEGAVGMVGMALDRLTAQGVVELDEERRAAMVSNLLVVLCGDRATQPVVNAGTLYN GT:EXON 1|1-294:0| TM:NTM 2 TM:REGION 11->33| TM:REGION 48->70| SEG 13->24|lvlvawlvltlv| SEG 42->68|vpalvaaiaatvvvvvlallatgltvv| SEG 125->136|veiaavvvyrvv| SEG 187->198|eeltvelrerte| SEG 219->234|aqamlvrqqaaqvvaa| RP:PDB:NREP 1 RP:PDB:REP 103->218|3bk6B|1e-10|15.5|110/142| RP:PFM:NREP 1 RP:PFM:REP 70->218|PF01145|2e-06|30.3|142/183|Band_7| HM:PFM:NREP 2 HM:PFM:REP 67->235|PF01145|1.3e-28|32.1|162/179|Band_7| HM:PFM:REP 11->69|PF01284|0.00069|25.4|59/144|MARVEL| RP:SCP:NREP 1 RP:SCP:REP 96->218|1winA|2e-08|16.2|117/143|d.43.2.1| HM:SCP:REP 94->233|1winA_|8.6e-12|29.1|134/0|d.43.2.1|1/1|Band 7/SPFH domain| OP:NHOMO 119 OP:NHOMOORG 117 OP:PATTERN -------------------------------------------------------------------- ----1-11111-------------------------1------1--------------------1-12121-------1-1---------11-1---------1-1-1--------------------------------------1-------------------------------------1-------1-111111111111111------111111-1---------1--------------------1-1--------1111---------------------11111111111-------------------------1------------11---------1-11---111-----1--------1--1---------------------------------11-11-1------------------------------------------------11111111-----------------1-11-1111--------------------------------------------------------------------------------------------------------------------------------------1--1----1--------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111111111-------------------------------------------------------------1- ------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-----1------------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 124 STR:RPRED 42.2 SQ:SECSTR ########################################################################################GGGHHHHc###cGGcccccEEEEEEEEEEEcTTccEEEEEEEEEEEEccHHHHHHccccHHHHHHHHHHHHHHHHHHTccHHEEc###HHHHcHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEccTTH############################################################################ DISOP:02AL 1-3, 243-244, 246-249| PSIPRED ccccccEEEcccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEcccHHEEEEEEccccEEHHHccccEEEccEEEEEEEEEEEEEEEccccEEEEccccEEEEEEEEEEEEEcHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccc //