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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56750.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  54/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1
:282 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   166->273 1bl0A PDBj 6e-15 21.5 %
:RPS:SCOP  157->267 1v4aA1  a.24.16.4 * 1e-13 12.7 %
:HMM:SCOP  218->268 1d5yA2 a.4.1.8 * 1.3e-07 38.0 %
:RPS:PFM   238->265 PF00165 * HTH_AraC 9e-05 53.6 %
:HMM:PFM   235->266 PF00165 * HTH_AraC 1.5e-09 41.9 31/42  
:BLT:SWISS 151->268 ARACL_STRLI 6e-09 35.7 %
:PROS 219->262|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56750.1 GT:GENE BAD56750.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2078655..2079503 GB:FROM 2078655 GB:TO 2079503 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56750.1 LENGTH 282 SQ:AASEQ MSGPVDPGEKGILHPREQSRHRTLERRPPGPAVGRFVDWYWIVHWDLRGRPAYRAEVLSFPCVNLTFERSATRTGAFVTGVTTTKYVRELTGVGSTFGVRFRAGGFGACTGIEVGALRDRSVPMREVFPDAGDLPEAVLTADSDEERQAMVEDWLARRAGTEDPVYRLVLRIVDAMEHDRTLTRVDQVTDRFGVPVRTLQRMFRRYVGAGPKWVLRRYRLQDGADLLAQGRVADLATLAVELGYFDQAHFSREFTAEIGMTPSEYARHSAALAGDSVGAPGR GT:EXON 1|1-282:0| BL:SWS:NREP 1 BL:SWS:REP 151->268|ARACL_STRLI|6e-09|35.7|112/304| PROS 219->262|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 97->108|fgvrfraggfga| RP:PDB:NREP 1 RP:PDB:REP 166->273|1bl0A|6e-15|21.5|107/116| RP:PFM:NREP 1 RP:PFM:REP 238->265|PF00165|9e-05|53.6|28/40|HTH_AraC| HM:PFM:NREP 1 HM:PFM:REP 235->266|PF00165|1.5e-09|41.9|31/42|HTH_AraC| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 1 RP:SCP:REP 157->267|1v4aA1|1e-13|12.7|110/151|a.24.16.4| HM:SCP:REP 218->268|1d5yA2|1.3e-07|38.0|50/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 68 OP:NHOMOORG 55 OP:PATTERN -------------------------------------------------------------------- -11-2------1--223----1---1------11111-11--1-12-1----1-----------1--1-1---------------------1-1-----------2------------------------------------------------------------------------------------------------1------1---------------------23--------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------1--------------------------------------------------------------11--------1----1----------------1-------------------1---------------------------------1----------------112----------------------------------1-----------------1-----1---------------1---1----------------------------------1------------------------------------------------------1---1----------------------------------1---------------------------------------------------22----------------------------------------------------- -------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 125 STR:RPRED 44.3 SQ:SECSTR ####################################################################################################################################################cHHHHHHTTccHHHHHHHHHHHHHHHHHHTTTTccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTcccccc######### DISOP:02AL 1-4, 267-282| PSIPRED ccccccHHHHHHccccccccccEEEEEcccHHHHHHHHHHHEEEEccccccccEEEEccccEEEEEEEcccccccEEEEEcccccEEEEccccEEEEEEEEccHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHcccccccccccccc //