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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56752.1
DDBJ      :             putative helicase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  144/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.69.7c.37.1e.25.1
:765 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   691->762 1qhgA PDBj 4e-04 40.0 %
:RPS:PDB   209->245 3d3xB PDBj 2e-04 2.7 %
:RPS:PDB   699->756 3dmnA PDBj 5e-07 24.1 %
:RPS:SCOP  45->118 1mqsA  e.25.1.1 * 6e-04 20.6 %
:RPS:SCOP  201->265,551->629 1w36B1  c.37.1.19 * 2e-08 15.4 %
:RPS:SCOP  679->756 1ve6A1  b.69.7.2 * 6e-10 19.5 %
:HMM:SCOP  192->757 1qhh.1 c.37.1.19 * 2e-44 25.3 %
:RPS:PFM   505->600 PF02562 * PhoH 2e-04 33.3 %
:RPS:PFM   696->749 PF01443 * Viral_helicase1 5e-05 48.1 %
:HMM:PFM   542->752 PF01443 * Viral_helicase1 3.7e-13 24.0 175/226  
:HMM:PFM   215->243 PF09848 * DUF2075 2.9e-06 53.8 26/352  
:BLT:SWISS 62->281 HELD_BACSU 1e-24 33.3 %
:BLT:SWISS 505->606 PHOL_SYNY3 3e-05 36.4 %
:BLT:SWISS 690->751 EX5B_CHLMU 4e-04 33.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56752.1 GT:GENE BAD56752.1 GT:PRODUCT putative helicase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2080475..2082772) GB:FROM 2080475 GB:TO 2082772 GB:DIRECTION - GB:PRODUCT putative helicase GB:PROTEIN_ID BAD56752.1 LENGTH 765 SQ:AASEQ MPDRLTQDRDATDAAADRDREIDREQAYLSVLYERLDAMRAYAQNRLRTVLLENGGAPQARSERESFTQLYTEDLAKYDAAEHGLCFGRIDLAEEDEPRYIGRLGILDERDDYATLLLDWRAPLARPFYLATTAAPDGVTRRRHIRTRNRSVTAINDEYLDLDAAQRAGMVESDGGVGSESALLAALNAARTGHMTDIVETIQSEQDAIIRSEHKSVLVVQGGPGTGKTAVALHRAAYLLYNYRQQLAKSGVLIVGPNATFLDYIGQVLPSLGETGVLLSTIGDLYPGVKATRTDTLRAGEIKGSLGILEVLKQAVRDRQEVPAQPIELSFDGYPVRLDKKIVTKARGRARSSRRPHNLARPIFANSVIDALTDQLAQTMGADLSGGPSLLSRADLAEIRDEMKSDPAVQAAIGRLWPLLTPQQVLADLLADPARLDRAGASLTPEERAELVRPDTGEFSAADAPLLDELAELLGVDDTEERERARRRWRAKLAEAQDALDILTGSAPQDLEDDLDPEILMAYDLIDASQLAERQDVRTRLTAAERAAGDRTWTYGHVIVDEAQELSEMAWRMVMRRIPNRWMTVVGDVAQTGDPAGAASWQQVLEPYVAQRWKLTELTVNYRTPAEIMTVAADVLAAIDPAATAPRSVRETGHRPRAERVTEAELPAAVARAVAEHHGPGTTAVIAPHELTDALAEVDGEAVRVLTVSEVKGLEFDTVLLVEPARIVEESPRGLNDLYVALTRATQRLHVLHTAELPAVLGALA GT:EXON 1|1-765:0| BL:SWS:NREP 3 BL:SWS:REP 62->281|HELD_BACSU|1e-24|33.3|213/774| BL:SWS:REP 505->606|PHOL_SYNY3|3e-05|36.4|99/328| BL:SWS:REP 690->751|EX5B_CHLMU|4e-04|33.9|62/100| SEG 3->27|drltqdrdatdaaadrdreidreqa| SEG 141->150|rrrhirtrnr| SEG 182->190|allaalnaa| SEG 426->439|ladlladparldra| SEG 461->474|aadaplldelaell| SEG 480->496|eererarrrwraklaea| SEG 631->646|vaadvlaaidpaatap| SEG 663->676|eaelpaavaravae| BL:PDB:NREP 1 BL:PDB:REP 691->762|1qhgA|4e-04|40.0|70/622| RP:PDB:NREP 2 RP:PDB:REP 209->245|3d3xB|2e-04|2.7|37/407| RP:PDB:REP 699->756|3dmnA|5e-07|24.1|58/159| RP:PFM:NREP 2 RP:PFM:REP 505->600|PF02562|2e-04|33.3|93/205|PhoH| RP:PFM:REP 696->749|PF01443|5e-05|48.1|52/220|Viral_helicase1| HM:PFM:NREP 2 HM:PFM:REP 542->752|PF01443|3.7e-13|24.0|175/226|Viral_helicase1| HM:PFM:REP 215->243|PF09848|2.9e-06|53.8|26/352|DUF2075| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF02562|IPR003714| GO:PFM GO:0004386|"GO:helicase activity"|PF01443|IPR000606| RP:SCP:NREP 3 RP:SCP:REP 45->118|1mqsA|6e-04|20.6|63/588|e.25.1.1| RP:SCP:REP 201->265,551->629|1w36B1|2e-08|15.4|143/469|c.37.1.19| RP:SCP:REP 679->756|1ve6A1|6e-10|19.5|77/313|b.69.7.2| HM:SCP:REP 192->757|1qhh.1|2e-44|25.3|384/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 246 OP:NHOMOORG 144 OP:PATTERN -------------------------------------------------------------------- ---131111111111------1---1------11112222-42424121111111113--3321423444-11111111111--------11-------------------------------------------------------------------------------------------1-------2-12222212212222222-11-1222---21--------22--------------------11212212111222222322111------------------------------------------------112333323222222122222211-----1--32-----1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 197 STR:RPRED 25.8 SQ:SECSTR ################################################################################################################################################################################################################TTcccccccEEEEEcTTccccEEEEEEETTEEEEEEE##################################################################################################################################################################################################################################################################HHHHHHHHHHTTccEEEEEccHHHHHHHHHHHTHHHHTTEETTEEccccccccEEEEccGGGccHHHHHHHHTTcTTcEEEEEEcTTc###################################################################################################HHHccEEEccccEEEEEGGGcTTccEEEEEEETccTTTcccGGGHHHHHHHHTTEEEEEEEEEccccEEETT### DISOP:02AL 1-19| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEEEcccccccccEEEEcccHHHHHHHccccccccccEEEEEEEEcccEEEEEEHHHccccccHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHcccHHHHHHHHHHHHHHHHccccEEEEEEccEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHcEEEEEEEccccccccccc //