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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56753.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  625/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
c.13.2d.110.3d.58.29
:442 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   36->125 1wa9B PDBj 5e-04 33.7 %
:BLT:PDB   278->429 3iclA PDBj 2e-20 38.9 %
:RPS:PDB   13->128 1d06A PDBj 7e-14 20.0 %
:RPS:PDB   144->202 3bicB PDBj 5e-05 22.8 %
:RPS:PDB   189->397 3btaA PDBj 2e-56 6.5 %
:RPS:SCOP  13->128 1d06A  d.110.3.2 * 3e-14 20.0 %
:RPS:SCOP  153->273 2ookA1  c.13.2.2 * 3e-08 8.5 %
:RPS:SCOP  280->440 1w25A3  d.58.29.2 * 1e-29 34.4 %
:HMM:SCOP  20->130 1ll8A_ d.110.3.5 * 3.1e-21 34.9 %
:HMM:SCOP  127->262 1ew0A_ d.110.3.2 * 6.2e-17 29.9 %
:HMM:SCOP  280->439 1w25A3 d.58.29.2 * 4.2e-48 46.2 %
:RPS:PFM   20->106 PF00989 * PAS 4e-09 41.2 %
:RPS:PFM   277->429 PF00990 * GGDEF 1e-24 48.0 %
:HMM:PFM   275->429 PF00990 * GGDEF 5.7e-46 45.8 155/161  
:HMM:PFM   18->126 PF00989 * PAS 1.3e-16 29.6 108/113  
:HMM:PFM   143->190 PF00989 * PAS 8.8e-06 26.1 46/113  
:BLT:SWISS 153->429 Y091_CAUCR 3e-32 38.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56753.1 GT:GENE BAD56753.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2082919..2084247) GB:FROM 2082919 GB:TO 2084247 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56753.1 LENGTH 442 SQ:AASEQ MGEEQTNDAVDAEQLAQRYRALVEHTPDGICVHEHGVIVYVNHATARLLGARTADDLVGRPLTDFVHPESVPGMLERIGKLTTAGAASQPTEMELVRVDGGTVPVETVSVLTPWHDHYAYQVVIHDLTAQRAAEDAQRRAEQHFTAVVEQLEEGVVVIARGGVIESANPAALRIFGADERYGDLVGYSIDDLPLTLLDANGKPLPVTRHPMARTLATGEAFTGYVFGIDRRDGQRRWLSGSSRLLNPGDPYSPAVSSFSDITEFRASRRQLEYQATHDSLTGLANRSLILSQLAGALAASDDLPVATVLFIDLDGFKSINDTLGHAIGDTVLQIVAQRLQRALRSEDLVGRLGGDEFLVLLANGPGPLDLDALVARLRATMAEPIVARGHRIQVRASIGVTELEPGDNRTPEAVLHDADVAMYRAKPPGHRDSAVADSSHVS GT:EXON 1|1-442:0| BL:SWS:NREP 1 BL:SWS:REP 153->429|Y091_CAUCR|3e-32|38.8|258/809| SEG 129->142|aqraaedaqrraeq| SEG 368->379|ldldalvarlra| BL:PDB:NREP 2 BL:PDB:REP 36->125|1wa9B|5e-04|33.7|89/318| BL:PDB:REP 278->429|3iclA|2e-20|38.9|149/159| RP:PDB:NREP 3 RP:PDB:REP 13->128|1d06A|7e-14|20.0|115/130| RP:PDB:REP 144->202|3bicB|5e-05|22.8|57/715| RP:PDB:REP 189->397|3btaA|2e-56|6.5|199/1277| RP:PFM:NREP 2 RP:PFM:REP 20->106|PF00989|4e-09|41.2|85/112|PAS| RP:PFM:REP 277->429|PF00990|1e-24|48.0|148/160|GGDEF| HM:PFM:NREP 3 HM:PFM:REP 275->429|PF00990|5.7e-46|45.8|155/161|GGDEF| HM:PFM:REP 18->126|PF00989|1.3e-16|29.6|108/113|PAS| HM:PFM:REP 143->190|PF00989|8.8e-06|26.1|46/113|PAS| GO:PFM:NREP 1 GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00989|IPR013767| RP:SCP:NREP 3 RP:SCP:REP 13->128|1d06A|3e-14|20.0|115/130|d.110.3.2| RP:SCP:REP 153->273|2ookA1|3e-08|8.5|106/125|c.13.2.2| RP:SCP:REP 280->440|1w25A3|1e-29|34.4|160/162|d.58.29.2| HM:SCP:REP 20->130|1ll8A_|3.1e-21|34.9|109/114|d.110.3.5|1/2|PYP-like sensor domain (PAS domain)| HM:SCP:REP 127->262|1ew0A_|6.2e-17|29.9|127/130|d.110.3.2|2/2|PYP-like sensor domain (PAS domain)| HM:SCP:REP 280->439|1w25A3|4.2e-48|46.2|158/0|d.58.29.2|1/1|Nucleotide cyclase| OP:NHOMO 8273 OP:NHOMOORG 637 OP:PATTERN -------------------------------------------31-43-------------------- FA26B---111---25311-1I33-111111-B7777D64CE9Ti-------545-----DA3-G3I6763----1----A1779J46------------------1-2----------------11-11112121CDDBB11184fQSJHH223DD---1--9G91ECL4------------R6954881671777775672767867-23333778576D1JI1323239C---------------1--1--11--------22---1--1--------------------------------------------------5FA5H66666668674B665454748--6777AGFD9685AA422452--B286AA31111127XST87HWPJRW3588378788I-WTOSSASSBT51IRRNWXOXacGERH8FA391BD9A784--------DHH2-fCS11111111111111111111111-11111-97F94A9742JFGGIHE7776EEUa888848KSQDOFP-3ONKZHZKNX12qA7USVUKXXbL-------56FNkn3IQFIJLO9fNKIP1KELcELFWR55559764C774----------------SEDOE43cUGUcWoOlQhkjijhfkYkjiWgcXUVtk---BaEh------DFGA3K7CCCBCBBBDA-ACBDC78BCBBABBCCBBEDIDDF--18489888888788897A5664359--E34444433444---S-----FHGGG9kEg---------------8788838-1-GZQQQPXWXXYWWUTRQST-----2---YKOONVVUUTTVThgLLMMMLKFGJ1111--a29977DD--------516-------------------------9839778756-1- ----1---------------------------------------------------------------------------------------------------------------------------------------------------------2----2---------82----------1--9-----6---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 430 STR:RPRED 97.3 SQ:SECSTR ##########cGHHHTccccccEEcTTcEEEEETTccEEEEEccHHHHccHccccTTccccHHHHcHHHHHHHHHHHHHHHHcccccEEEEEEEETTEEEEEEEEETTEEEEEEEEcccccccTTHHHHHHHHHHHHHHTTTTTcccEEcTTEEEEEEcTTccEEEEEGGGTTTTcccccHHTTcccccccccccTTcccHHHHHHHccccEEEEEcccccccccEEEETTEEEEEEEcccccGGGccccccHccccccccccTTTTccHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHccccEccTTccTTcccccGGGEEEEEcTTccEEEEEccEEEEEccccTTccEEEccccccccTTTccccccEEEEccccEEcEEccccGGGTcTTEEEEEEcccccccTHHHHHHHHHHHHHHHcEETTTEEEEcHHc## DISOP:02AL 1-3, 8-16, 441-442| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccEEEEcHHHHHHHccccHHHHHcccHHHHccccHHHHHHHHHHHHHHccccccEEEEEEEEccccEEEEEEEEEEEEcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccEEHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEEEEEEccccEEEEEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHccEEEccEEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEcHHHcc //