[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56754.1
DDBJ      :             putative 3-oxoacyl-ACP synthase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  753/915 : Eukaryota  117/199 : Viruses  0/175   --->[See Alignment]
c.95.1
:389 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   187->316 2iwzA PDBj 7e-22 42.2 %
:RPS:PDB   2->385 2c9hA PDBj 3e-20 22.5 %
:RPS:SCOP  11->32 1tqyB1  c.95.1.1 * 4e-04 40.9 %
:RPS:SCOP  107->233 1b3nA1  c.95.1.1 * 5e-06 17.3 %
:RPS:SCOP  205->388 1tqyA2  c.95.1.1 * 7e-21 25.5 %
:HMM:SCOP  1->347 1tedA_ c.95.1.2 * 1.9e-37 32.1 %
:RPS:PFM   269->310 PF02801 * Ketoacyl-synt_C 6e-05 52.4 %
:HMM:PFM   9->232 PF00109 * ketoacyl-synt 1.6e-27 29.0 217/253  
:HMM:PFM   239->346 PF02801 * Ketoacyl-synt_C 1.7e-29 36.1 108/119  
:BLT:SWISS 187->316 OXSM_HUMAN 2e-21 42.2 %
:PROS 151->169|PS00098|THIOLASE_1
:PROS 146->162|PS00606|B_KETOACYL_SYNTHASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56754.1 GT:GENE BAD56754.1 GT:PRODUCT putative 3-oxoacyl-ACP synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2084448..2085617 GB:FROM 2084448 GB:TO 2085617 GB:DIRECTION + GB:PRODUCT putative 3-oxoacyl-ACP synthase GB:PROTEIN_ID BAD56754.1 LENGTH 389 SQ:AASEQ MRADRSRGLSIVGMGAVTPYGWGIEALWRGLLTGQPAAAPHPGYGPGRDEQAWVALVPEGGDPGTGDDRYARAVLAAVREAVADARARDWRPGRTVGLIHAIVLGDVRGWRDFHTLDEADRTSRGYLGLLPSTPIALAMREFGFHGPTMNVSAACSSANAAVLTARLWLDAGLADDVVVVTSDLSGTPDMVERFVRLGAAVTDADPLTACRPFQEGSRGFVFGEASVAFVIGRDNGRPYARVLGAAMTNDAHHVVSIDPEHTHIVDCARRALAQAGVRPEDIAYVNAHGTGTRQCDLAERHLVADVFADRPHLYALKPLTGHSQGASGAVELAVAALAYERGVVPAAPVVAPAHPRLLDGPTPLVDGLTLKSSLGMGGHNSMLVLGPPH GT:EXON 1|1-389:0| BL:SWS:NREP 1 BL:SWS:REP 187->316|OXSM_HUMAN|2e-21|42.2|128/459| PROS 151->169|PS00098|THIOLASE_1|PDOC00092| PROS 146->162|PS00606|B_KETOACYL_SYNTHASE|PDOC00529| SEG 34->47|gqpaaaphpgygpg| SEG 67->91|ddryaravlaavreavadarardwr| SEG 150->162|nvsaacssanaav| SEG 175->180|ddvvvv| SEG 325->338|gasgavelavaala| SEG 343->355|vvpaapvvapahp| BL:PDB:NREP 1 BL:PDB:REP 187->316|2iwzA|7e-22|42.2|128/426| RP:PDB:NREP 1 RP:PDB:REP 2->385|2c9hA|3e-20|22.5|383/426| RP:PFM:NREP 1 RP:PFM:REP 269->310|PF02801|6e-05|52.4|42/118|Ketoacyl-synt_C| HM:PFM:NREP 2 HM:PFM:REP 9->232|PF00109|1.6e-27|29.0|217/253|ketoacyl-synt| HM:PFM:REP 239->346|PF02801|1.7e-29|36.1|108/119|Ketoacyl-synt_C| RP:SCP:NREP 3 RP:SCP:REP 11->32|1tqyB1|4e-04|40.9|22/208|c.95.1.1| RP:SCP:REP 107->233|1b3nA1|5e-06|17.3|127/250|c.95.1.1| RP:SCP:REP 205->388|1tqyA2|7e-21|25.5|184/205|c.95.1.1| HM:SCP:REP 1->347|1tedA_|1.9e-37|32.1|312/0|c.95.1.2|1/1|Thiolase-like| OP:NHOMO 1313 OP:NHOMOORG 870 OP:PATTERN -------------------------------------------------------------------- -2113---------43322-23223322222234442112113111---211-1211-1143112378541--------1--2111111113111111-133221654221111111111111111111111111121144111231121112111112211121-222321111111111111111111-213111111111111111111113111111111111111123111111111111111111111-111111-1-1111111111111112221111111111111111111111111111111111111111111122111111111121111111111--12111112111111111111-1212------1--32111221222221111111111--221221121311222-112111122141-11211112111111111111-121-311111111----11111111111111111--1111211113223132111111321111114231213--3341112111-221-1-1112211122221111112-1--31121-2222-12112224311114312-1--1-----11111111-1-----2233111-11--133333-2211132232312--11111------31111311443111111-4111111111413111113111411111111111111111111311211111-322222212222--1212111222211-23----2-------11---11--111111111132231212113222--------1233311111-231133111111111111111---------------1-1-------------------------1111111111141 11----2-211--111----1-----1------11-------------121---11--1111111-1-----111------111-1-----------------1-1--2-211221-11-11113111-231-11111111111111-1-11-11111111-12112111522211334i3223184571471121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 389 STR:RPRED 100.0 SQ:SECSTR HcccccccEEEEEEEEEETTEEcHHHHHHHHHTTcccEEEcccGGGTTccccEEEcccccccTTccHHHHHHHHHHHHHHHHHTcccccHHHHHTEEEEEEEccccHHHHHHHHHHcGGGccTTHHHHHcTTHHHHHHHHHHTccccEEccccGGHHHHHHHHHHHHHHHHTcccEEEEEEEEccccHHHHHHHHHTTcccccccTTTcccTTcTTccccccccEEEEEEEEEHTccccEEEEEEEEEEcccccccccTTcHHHHHHHHHHHHHHTccGGGEEEEEccccccHHHHHHHHHHHHHHHGGTcEEEccHHHHcccGGGHHHHHHHHHHHHHHHTTTcccccTTccccccccccEEccccEEEEEEEETTTEEEEEEEEEcc DISOP:02AL 1-5| PSIPRED ccccccccEEEEEEEEEccccccHHHHHHHHHccccccccccccccccccccEEEEEcccccHHHHccHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEccHHHHHHHHHHccccccccEEHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEEEEEcccEEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccHHHccEEEEccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEccccccEEEEEEEEccc //