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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56763.1
DDBJ      :             putative ribosomal RNA methyltransferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  175/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.116.1d.79.3
:279 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   134->248 1x7pB PDBj 3e-07 30.4 %
:RPS:PDB   129->250 3e5yA PDBj 4e-08 18.3 %
:RPS:SCOP  15->109 1ipaA2  d.79.3.3 * 1e-14 22.8 %
:RPS:SCOP  114->251 1ipaA1  c.116.1.1 * 5e-13 25.4 %
:HMM:SCOP  11->112 1ipaA2 d.79.3.3 * 1.3e-20 39.2 %
:HMM:SCOP  101->273 1v2xA_ c.116.1.1 * 1.4e-39 40.6 %
:RPS:PFM   133->250 PF00588 * SpoU_methylase 3e-07 33.6 %
:HMM:PFM   125->266 PF00588 * SpoU_methylase 2.1e-36 40.3 139/142  
:HMM:PFM   40->110 PF08032 * SpoU_sub_bind 3.2e-11 31.0 71/76  
:BLT:SWISS 15->251 YSGA_BACSU 2e-14 27.8 %
:PROS 209->217|PS00039|DEAD_ATP_HELICASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56763.1 GT:GENE BAD56763.1 GT:PRODUCT putative ribosomal RNA methyltransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2093604..2094443 GB:FROM 2093604 GB:TO 2094443 GB:DIRECTION + GB:PRODUCT putative ribosomal RNA methyltransferase GB:PROTEIN_ID BAD56763.1 LENGTH 279 SQ:AASEQ MTQGSPSKRPADALSERNPRVVSAVKLHRAAHRRRTGLFLAEGANAVTAALDTGRVRELFYSAAAAEREHELVATAAATGVRTTLVSDRAAEHLGETVTAPGLVAVCEQIDVPLPEVLARDPRLLAVPVEIAEPGNAGTLIRVADAVGADGVVLAGHTVDPHNGKCVRASAGSLFHVPVVRGREVVPTLDALHAAGLTLLATAADGEVVLDEADEILAGPVAWLFGNEAHGLDPAVAARADHRVRIPIHGRAESLNLAAAAAICLYASARVHHRDAARR GT:EXON 1|1-279:0| BL:SWS:NREP 1 BL:SWS:REP 15->251|YSGA_BACSU|2e-14|27.8|223/248| PROS 209->217|PS00039|DEAD_ATP_HELICASE|PDOC00039| SEG 73->86|vataaatgvrttlv| SEG 143->156|vadavgadgvvlag| SEG 188->206|tldalhaagltllataadg| SEG 252->269|aeslnlaaaaaiclyasa| BL:PDB:NREP 1 BL:PDB:REP 134->248|1x7pB|3e-07|30.4|115/253| RP:PDB:NREP 1 RP:PDB:REP 129->250|3e5yA|4e-08|18.3|120/156| RP:PFM:NREP 1 RP:PFM:REP 133->250|PF00588|3e-07|33.6|116/143|SpoU_methylase| HM:PFM:NREP 2 HM:PFM:REP 125->266|PF00588|2.1e-36|40.3|139/142|SpoU_methylase| HM:PFM:REP 40->110|PF08032|3.2e-11|31.0|71/76|SpoU_sub_bind| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 2 RP:SCP:REP 15->109|1ipaA2|1e-14|22.8|92/100|d.79.3.3| RP:SCP:REP 114->251|1ipaA1|5e-13|25.4|134/158|c.116.1.1| HM:SCP:REP 11->112|1ipaA2|1.3e-20|39.2|102/105|d.79.3.3|1/1|L30e-like| HM:SCP:REP 101->273|1v2xA_|1.4e-39|40.6|165/191|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 178 OP:NHOMOORG 175 OP:PATTERN -------------------------------------------------------------------- 111-211111111111111-11111111111111111111-11112111111111111--12111111111--------------------------------------------------------1-----1-----------1--1-11-1111------1--111-------------------1--11111111111111111111111111111-11111----1111111111111111111-------1111--------111---------------------------------------------111----1--------------1-------1-1---11-1--1111-1-1---1----1-11111-----------------------------------------------1-1111---1-------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------1----------------------------------------------------------------------1--------1-------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 151 STR:RPRED 54.1 SQ:SECSTR ################################################################################################cccccccEEE###EEccccccccEEcTTccEEEccccHHHHHHHHHHHHHHTcEEEEEccccccccHHHHHHTTccHHHHHTcEEEccHHHHHHHHcccGGGEEEEccTTcEEGGGccHHccTTcEEEEEcTTTcccHHHHTcGGGEEEccccc############################# DISOP:02AL 1-17, 28-33, 274-279| PSIPRED cccccccccccEEcccccHHHHHHHHHHccccHHHHccEEEEEHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccEEEEcHHHHHHHHcccccccEEEEEEccccccHHHHcccccEEEEEEccccccHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHcHHHEEEEEEEccHHHHHHHHHHcccEEEEEccccccccHHHHccccccEEEEEccccccccHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccc //