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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56768.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  14/68 : Bacteria  539/915 : Eukaryota  95/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:254 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->99 2uvdA PDBj 1e-15 47.3 %
:RPS:PDB   7->183 2ae1A PDBj 2e-21 25.9 %
:RPS:SCOP  7->145 1n5dA  c.2.1.2 * 6e-21 28.1 %
:HMM:SCOP  1->242 1zemA1 c.2.1.2 * 3e-40 33.8 %
:RPS:PFM   7->135 PF00106 * adh_short 3e-10 41.9 %
:HMM:PFM   7->144 PF00106 * adh_short 2.2e-20 24.3 136/167  
:BLT:SWISS 6->222 FABL_BACSU 2e-18 32.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56768.1 GT:GENE BAD56768.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2099068..2099832 GB:FROM 2099068 GB:TO 2099832 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD56768.1 LENGTH 254 SQ:AASEQ MVDADSKVALVTGASRGIGAETAKQLAARGLHVVVNYREKAKRAQGVVEEIVAAGGQATALGADLADPAEVTGMLEEIRTRFGGLHALILNASGGLERDADPGYALRLNRDAQVHLATSALPLMGPGGRVVFVTSHQAHFHGTGRPLPEGYEPIAAGKRAGEDALRALLPEFTRRGVGFVVVSGEMIDGTIIVRLLERRDPAAVEARRSAGPLPTVDDFARTVVAAVDAPVADGHTFYVGGEDYRAGEARPAVS GT:EXON 1|1-254:0| BL:SWS:NREP 1 BL:SWS:REP 6->222|FABL_BACSU|2e-18|32.9|210/250| SEG 223->233|vvaavdapvad| BL:PDB:NREP 1 BL:PDB:REP 7->99|2uvdA|1e-15|47.3|91/246| RP:PDB:NREP 1 RP:PDB:REP 7->183|2ae1A|2e-21|25.9|170/252| RP:PFM:NREP 1 RP:PFM:REP 7->135|PF00106|3e-10|41.9|129/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 7->144|PF00106|2.2e-20|24.3|136/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 7->145|1n5dA|6e-21|28.1|139/288|c.2.1.2| HM:SCP:REP 1->242|1zemA1|3e-40|33.8|234/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1375 OP:NHOMOORG 648 OP:PATTERN -----------------1-11---1--221-1-----------1---2------1-----1-1-1--- 315-3---1111--523----21114-----13444836515132-2--21121313111221-13345211---111--114----1--------1----3-1183932---------------1----1---1-11121--12131-31111111----22-11253611-11111-11113-1-----51444444446234544332442343422331212222231432211111112221122322----12-----12--11--1-1-112--------------------------------------------11213111111111111221---1----1111-111--11-22--11---2-34222-----22552-111-22-11221222222-2211-3-3345-A6626748F6353-3212-211112--1111111113321-1-11-----1----------------------22341-11118994752111133871111-2C49397212764-1--11-2141241-2121---------1221--11211-1111--1--4--2-12-1322461---11-11111--11111111111--1123-22---3----1111211------11------1-1------31131422221211122-22221112122122222237576--11111111111111111171212212--2--------------1-----2222-1344111-2-1-----11-11122-1-123233336235223323213----------1--11-11-121--2432411111-------------------------------------------------------------2- 1-----1-------1131133422514-------1--------1112312321412242322--1----1--------------1----5733131-11------1-31-2-1-1----11-1111-11131-111-21-11-2--12-1--1------1-1---2---------11-1B--11--334242112---2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 251 STR:RPRED 98.8 SQ:SECSTR GGccTTcEEEEETcccHHHHHHHHHHHTTTcEEEEEEcccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEEcccccccHHHHHHHHHHHTHHHHHHHHHHHHHHTccEEEEEEccGGGTcccGTccccTTcHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEcccccHHHHHHGGGGcTTHHHHHHHHHHTTccEEEEHTHHHcGGGTTccccEEEEcTTGGGccccTT### DISOP:02AL 1-2, 252-254| PSIPRED cccccccEEEEEccccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHccccEEEEEHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHcccccccccEEEEEcccEEEccccccccc //