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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56769.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  155/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:120 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->105 3f8fB PDBj 6e-17 31.7 %
:RPS:PDB   14->101 2e1nB PDBj 7e-08 21.8 %
:RPS:SCOP  11->105 1yg2A  a.4.5.61 * 3e-11 27.9 %
:HMM:SCOP  5->107 1xmaA_ a.4.5.61 * 2.1e-26 42.7 %
:RPS:PFM   14->85 PF03551 * PadR 8e-12 43.1 %
:HMM:PFM   13->90 PF03551 * PadR 1.6e-27 46.2 78/86  
:BLT:SWISS 3->103 YX_BACSH 8e-12 27.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56769.1 GT:GENE BAD56769.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2099906..2100268 GB:FROM 2099906 GB:TO 2100268 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56769.1 LENGTH 120 SQ:AASEQ MYIDKDLVAASSTLLVLGILAEGESYGYAILKRVRELSGGRIEWTDGMLYPLLHRLERSGYVDASWGASESGRRRKHYAITEAGRAVLVERRSQWDAVAEALDEVWRSARLPLATEGGLA GT:EXON 1|1-120:0| BL:SWS:NREP 1 BL:SWS:REP 3->103|YX_BACSH|8e-12|27.7|101/109| BL:PDB:NREP 1 BL:PDB:REP 5->105|3f8fB|6e-17|31.7|101/111| RP:PDB:NREP 1 RP:PDB:REP 14->101|2e1nB|7e-08|21.8|87/112| RP:PFM:NREP 1 RP:PFM:REP 14->85|PF03551|8e-12|43.1|72/84|PadR| HM:PFM:NREP 1 HM:PFM:REP 13->90|PF03551|1.6e-27|46.2|78/86|PadR| RP:SCP:NREP 1 RP:SCP:REP 11->105|1yg2A|3e-11|27.9|86/169|a.4.5.61| HM:SCP:REP 5->107|1xmaA_|2.1e-26|42.7|103/0|a.4.5.61|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 284 OP:NHOMOORG 164 OP:PATTERN -----------------------1-11-------1--------11-------------11-------- 9Db-2-1--------------------------1111-11-1-2-4------21---1--1--1-12111----------2-1------------------------2-1----------------------------------2--------------------------------------1-6-------122222132142221221--21123---11-2------21---------------2----1-1-22-----1---11--111-2111111----11-----------1111111111111-1----1111-11-1212-111-2-2133-11-1-2-1-11--441------1-------1--1331---------1-----------------------------2--1--1---1----11--1-------------------11----1-----------------------------------------------1111----111111------------------------------1-----------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11------------------------------1-1------------------------------------2- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 109 STR:RPRED 90.8 SQ:SECSTR ##ccHHHHHHHHHHHHHHHHTTccEEHHHHHHHHHHHcTHTEEccHHHHHHHHHHHHHTTcEEEEEccTTccccEEEEEEccccccHHHHHHHHHHHHHHcTHTTccHHHH######### DISOP:02AL 1-4, 69-71, 114-117, 119-120| PSIPRED ccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc //