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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56791.2
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  8/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:487 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   62->115 2axvB PDBj 8e-09 15.1 %
:RPS:SCOP  56->110 1y7yA1  a.35.1.3 * 6e-07 27.3 %
:HMM:SCOP  57->110 1x57A1 a.35.1.12 * 9.2e-07 33.3 %
:HMM:PFM   67->101 PF01381 * HTH_3 1.1e-06 40.0 35/55  
:HMM:PFM   418->437 PF07721 * TPR_4 0.00015 35.0 20/26  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56791.2 GT:GENE BAD56791.2 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2122692..2124155) GB:FROM 2122692 GB:TO 2124155 GB:DIRECTION - GB:PRODUCT putative DNA-binding protein GB:PROTEIN_ID BAD56791.2 LENGTH 487 SQ:AASEQ MLPYPVTESAHALPVRSVRIRRTIPRKAPPPLAFLDRTSEVDRTPVVVKNCQGVAEMLNEAEAGAVLRNLRKSRGLTLAAVARQAGCAESLISYVESGRRRLQPWLAGRLDAIYCTGGAISALTADAGSAVDVSAERVSQGELLFVRLPSEGGISMPLSRRELLASLGAGITTGHLLTEFEKALDRIPIDDCSMQQFEDALDGFQSAARSLPPARVIDGLTSHVAVLEMLCRRTAGRQQLVWRRMQARYAESLSWLSEERGDLAAAIYWIDRASQWGQASGWRDVAAYSFVRRSMLAISFTNDGHRAVDNAGAAFGIGGVSPRVKGLAEKQMAFGYALLGDENASLRALDRAMTYLAMPLRDSDDLLGQRSVVHDDLFAIFRATCDIYLGRGDRVVPILRPRLTSLSSSSARTATITHAKLARAYANAGQPEEAAREALTALNASEQLGSLSARSELRRALPVLHRWRRRDDIRAVLRRLTPIARDA GT:EXON 1|1-487:0| SEG 397->417|pilrprltslssssartatit| SEG 466->480|rwrrrddiravlrrl| RP:PDB:NREP 1 RP:PDB:REP 62->115|2axvB|8e-09|15.1|53/303| HM:PFM:NREP 2 HM:PFM:REP 67->101|PF01381|1.1e-06|40.0|35/55|HTH_3| HM:PFM:REP 418->437|PF07721|0.00015|35.0|20/26|TPR_4| RP:SCP:NREP 1 RP:SCP:REP 56->110|1y7yA1|6e-07|27.3|55/69|a.35.1.3| HM:SCP:REP 57->110|1x57A1|9.2e-07|33.3|54/0|a.35.1.12|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 11 OP:NHOMOORG 8 OP:PATTERN -------------------------------------------------------------------- ----2-------------------------------1-----2------------------1--2-11--1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 75 STR:RPRED 15.4 SQ:SECSTR #####################################################ccHHHHHHcHHHHHHHHHHHHTccHHHHHTHTTccHHHHHHHHTTcccccHHHHHHHHHHHTcccHHHHcHHHHc####################################################################################################################################################################################################################################################################################################################################################################### DISOP:02AL 1-1,316-317,486-488| PSIPRED ccccccccccccccccEEEHHccccccccccHHHHHccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccHHEEccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccc //