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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56792.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  43/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:149 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->81 3deuA PDBj 7e-04 32.9 %
:BLT:PDB   60->112 3fm5B PDBj 1e-07 45.1 %
:RPS:PDB   8->139 2a61A PDBj 9e-13 23.7 %
:RPS:SCOP  6->116 2fbiA1  a.4.5.28 * 2e-16 21.6 %
:HMM:SCOP  3->140 1jgsA_ a.4.5.28 * 2e-24 31.4 %
:RPS:PFM   38->90 PF01047 * MarR 5e-04 39.6 %
:HMM:PFM   35->90 PF01047 * MarR 2e-10 32.1 56/59  
:BLT:SWISS 38->142 HCRR_THAAR 6e-11 31.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56792.1 GT:GENE BAD56792.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2124590..2125039) GB:FROM 2124590 GB:TO 2125039 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56792.1 LENGTH 149 SQ:AASEQ MGTTDRPDLAAMLAPLIRTLIALERPVLEAHELSMWAYTVLSALSRGTARGQGALAQEIGADKTRIIAVLDDLQDRGLIERTPDPADRRARLLALTPEGRRRYAAVHAEIQAREDEQVLAHLPAAERRGFLAALRVLSERSSTDGRAQN GT:EXON 1|1-149:0| BL:SWS:NREP 1 BL:SWS:REP 38->142|HCRR_THAAR|6e-11|31.7|104/166| BL:PDB:NREP 2 BL:PDB:REP 9->81|3deuA|7e-04|32.9|73/132| BL:PDB:REP 60->112|3fm5B|1e-07|45.1|51/137| RP:PDB:NREP 1 RP:PDB:REP 8->139|2a61A|9e-13|23.7|131/142| RP:PFM:NREP 1 RP:PFM:REP 38->90|PF01047|5e-04|39.6|53/59|MarR| HM:PFM:NREP 1 HM:PFM:REP 35->90|PF01047|2e-10|32.1|56/59|MarR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01047|IPR000835| GO:PFM GO:0005622|"GO:intracellular"|PF01047|IPR000835| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01047|IPR000835| RP:SCP:NREP 1 RP:SCP:REP 6->116|2fbiA1|2e-16|21.6|111/136|a.4.5.28| HM:SCP:REP 3->140|1jgsA_|2e-24|31.4|137/0|a.4.5.28|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 49 OP:NHOMOORG 44 OP:PATTERN -------------------------------------------------------------------- ----2---------1-----------------11111-22-2121-------1---------1-1-111-1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--11---1--1---------------1--1-------------------1-----1----------------11----1--------------------------------1--11111--------------1--------1---------------------------------------------------1---------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 143 STR:RPRED 96.0 SQ:SECSTR ccccccHHHHHHHHHHHHHHHHHHHTTHHHHTccHHHHHHHHHHHHHccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEETTEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHTcc###### DISOP:02AL 1-3, 139-149| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEcccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccc //