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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56799.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  68/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:360 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   98->183 2de3B PDBj 2e-05 36.0 %
:RPS:PDB   42->342 2de2A PDBj 2e-16 15.2 %
:RPS:SCOP  68->252 1us4A  c.94.1.1 * 5e-12 19.9 %
:HMM:SCOP  39->300 1us5A_ c.94.1.1 * 2.7e-27 22.4 %
:RPS:PFM   80->261 PF09084 * NMT1 1e-11 30.9 %
:HMM:PFM   53->268 PF09084 * NMT1 1e-24 20.6 209/216  
:BLT:SWISS 48->301 SSUA_ECOLI 3e-10 33.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56799.1 GT:GENE BAD56799.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2128191..2129273 GB:FROM 2128191 GB:TO 2129273 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56799.1 LENGTH 360 SQ:AASEQ MSRTAFTRRLTRAAAVVLAAAGALSTLGACGQSSTATTADGKTVLRYQGTTGQVTAFELADDLGYFSKISLKWEGDTTSGPASIQAAATNQTEFGSAFNGAVVKLISGGAKVTSVLSSYGADELSFSGYYVREDSPITTARDLIGKKVAVNTLGAHHEFITREWLHQQGLSEAEIDQVQLVVVPPANTEDALRKGQVDVGTLGSVFRETALERGGLRPLYTDKAIFGEFDYGTYVFRDEFIEKNRDAVADFVQGTARATRWLQVTPREEVVARFADIINRRGRNENTDLLKYWRSPGIPVPGAVIAEKELQIWIDWLVRNGELDQGKLRASDLFTNEFNPYANGTYQPASGPTGEAVAQK GT:EXON 1|1-360:0| BL:SWS:NREP 1 BL:SWS:REP 48->301|SSUA_ECOLI|3e-10|33.2|220/319| SEG 2->29|srtaftrrltraaavvlaaagalstlga| BL:PDB:NREP 1 BL:PDB:REP 98->183|2de3B|2e-05|36.0|86/347| RP:PDB:NREP 1 RP:PDB:REP 42->342|2de2A|2e-16|15.2|290/347| RP:PFM:NREP 1 RP:PFM:REP 80->261|PF09084|1e-11|30.9|175/200|NMT1| HM:PFM:NREP 1 HM:PFM:REP 53->268|PF09084|1e-24|20.6|209/216|NMT1| RP:SCP:NREP 1 RP:SCP:REP 68->252|1us4A|5e-12|19.9|171/298|c.94.1.1| HM:SCP:REP 39->300|1us5A_|2.7e-27|22.4|254/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 90 OP:NHOMOORG 70 OP:PATTERN -------------------------------------------12----------------------- ----1---222---1----------2----------1252------------1-1--1-------11---1------------------------------------------------------------------------------------------------1----------------1---------------11-111--11-----11-1-------------2----------------------------------------------------------------------------------------------1------------11------1-------1------------------------------112------------------------------------1---1112-------1---------------------------------------------------------------12222------11-1------111------------------2--1------------------------------------1----1-------2---------------------------------------------------------------------------1------------------------------------------------------------1---------------------------------------------------111-1-1---1-----------------1------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 315 STR:RPRED 87.5 SQ:SECSTR ####################################ccccccEEEEEEcccccccHHHHHHHHTHHHHEEEEEcEcccTTccccGGGcTTEEEEEccHHHHHHHHTTcTTcEEEEEEEEEccEcccEEEEEcTTcccccGGGGTTcEEEEcHTTHHHHHHHHHHHHTTTccGGGcEEEGTHHHHHHHHHHHHHHTcccEEEEEHHHHHHHHHTTcEEcccGGGGcGGGcEEEEEEEEHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHTGHHHHHHHHHHHHTccHHHHHHHHcTTGGGcccccccHHHHHHHHHHHHHHTTcccccccHHHHccHHHHHHHccccTTccE######### DISOP:02AL 1-3, 36-37, 352-360| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEccccHHHHHHHHHcccHHHccEEEEEEEcccHHHHHHHHcccEEEEEEccHHHHHHHHccccEEEEEEEEccccccEEEEEEEcccccccHHHHcccEEEEEcccccHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHcccEEEEEEccHHHHHHHHccccEEEEEcHHHccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccHHHHccccccHHHccccccccccccHHcccc //