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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56801.1
DDBJ      :             putative ABC transporter membrane protein
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  605/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:288 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   77->217 2onkC PDBj 5e-05 32.6 %
:RPS:PDB   143->215 3dhwA PDBj 8e-10 20.5 %
:RPS:SCOP  88->282 2r6gG1  f.58.1.1 * 4e-14 13.3 %
:RPS:PFM   158->279 PF00528 * BPD_transp_1 1e-04 30.6 %
:HMM:PFM   110->280 PF00528 * BPD_transp_1 6e-27 26.9 171/185  
:BLT:SWISS 45->283 Y3648_BRUA2 4e-37 33.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56801.1 GT:GENE BAD56801.1 GT:PRODUCT putative ABC transporter membrane protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2130097..2130963 GB:FROM 2130097 GB:TO 2130963 GB:DIRECTION + GB:PRODUCT putative ABC transporter membrane protein GB:PROTEIN_ID BAD56801.1 LENGTH 288 SQ:AASEQ MTSVVDVRPDAVPDVRATPVESAPSAGARLAAVAGRTAWRGVKPLFAIAAFLAIWQLAPQAGLVDEVFLPPFTTVAEAFVDLVRSGEMWTHVSTSLGRSLSGFAIALAIAVPLGVAIAWYKPVADLLNPILELFRNTAALALLPVFVLILGIGETSKVALVVYASTFPILLNTITGVRTVDPLLIKSAASLGLKPLRLFQKVILPAAIPAIFTGLRMAAASSILVLLAAEMVGARAGLGYLITAAQQNFQIPNMYAGILAISLLGLSFNGLLVALERRFSRWRAESNH GT:EXON 1|1-288:0| BL:SWS:NREP 1 BL:SWS:REP 45->283|Y3648_BRUA2|4e-37|33.5|236/250| TM:NTM 6 TM:REGION 30->52| TM:REGION 99->121| TM:REGION 146->168| TM:REGION 195->217| TM:REGION 224->246| TM:REGION 254->276| SEG 4->17|vvdvrpdavpdvra| SEG 218->229|aaassilvllaa| BL:PDB:NREP 1 BL:PDB:REP 77->217|2onkC|5e-05|32.6|141/252| RP:PDB:NREP 1 RP:PDB:REP 143->215|3dhwA|8e-10|20.5|73/203| RP:PFM:NREP 1 RP:PFM:REP 158->279|PF00528|1e-04|30.6|121/195|BPD_transp_1| HM:PFM:NREP 1 HM:PFM:REP 110->280|PF00528|6e-27|26.9|171/185|BPD_transp_1| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 1 RP:SCP:REP 88->282|2r6gG1|4e-14|13.3|195/284|f.58.1.1| OP:NHOMO 2387 OP:NHOMOORG 635 OP:PATTERN ---------------------1-3----1---11-2112222223221121131------1-----11 -1-151-1113-1-433----2---E------34449BA5-627321--12-6-6131--12--5446353122211111135----11111-211---------1-1---------1111111-1---1-----123333---34214333433342-1-11331353311------------211----11355555566455555692222355432424212222223C122222222222222144231-11221-1--2211431-2121---22212-1255222222222221111111111111222---22211125A1112332222358822223451-41---98262-33-72111-21--1222------55ILU-36C23D45554545454A-EBFB9DCC9D21PEED87BCABBCPF1--84B697763521222222212-44-2-----------------------------1--1-16HFD65CDDD654553999D555534B7RB8BA-3774256238565KH151163421-------21-1331371332-213--3128--2-3--22223914-211-----------------------3111111-2-2-1111-1----------1---11311------6565-443333333333-3333333323333333334696881112212222222222222522332331-344444424444--------------23331----1-111-1--15554514--1A697587A97368474776---------21222-----343221-2-1------------3-------------------------------------------121121222--1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------3---------------------3--3---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 141 STR:RPRED 49.0 SQ:SECSTR ############################################################################HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHH####################################################################### DISOP:02AL 1-4, 6-10, 12-33, 283-288| PSIPRED cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc //