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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56810.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  428/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:281 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->84 3hhgG PDBj 6e-10 33.3 %
:RPS:PDB   1->111 1b9nA PDBj 1e-17 13.6 %
:RPS:PDB   87->242 3e4rA PDBj 2e-08 13.5 %
:RPS:SCOP  1->106 1b9mA1  a.4.5.8 * 7e-19 15.1 %
:RPS:SCOP  82->250 1i69A  c.94.1.1 * 5e-13 23.9 %
:HMM:SCOP  3->109 1b9mA1 a.4.5.8 * 6.2e-22 32.4 %
:HMM:SCOP  82->280 1al3A_ c.94.1.1 * 2.4e-19 26.0 %
:RPS:PFM   5->63 PF00126 * HTH_1 4e-08 45.8 %
:HMM:PFM   101->277 PF03466 * LysR_substrate 5.9e-25 26.3 175/209  
:HMM:PFM   6->63 PF00126 * HTH_1 2e-23 50.0 58/60  
:BLT:SWISS 1->186 YNFL_ECOLI 3e-14 33.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56810.1 GT:GENE BAD56810.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2138071..2138916) GB:FROM 2138071 GB:TO 2138916 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56810.1 LENGTH 281 SQ:AASEQ MDLQVRHLAAFVALCDTGTYTRAAARLHLTQPSLTRTIQDLERILDCDLVIRGGRGLELTAEGAEFLPRARRILTDLTELHDDMRGRAVVRLGFAWLLPSDWFAATRARYEALGGTLAIHRVDDPAGALEHGRIDVALARTVHRESAAITWRRIGTERRVLAVSTHSALARRPGLSWADLAAHPLVVNIRSGTTTPSDWPDPRTDREIVTCTNFDEWLELVAADRGIGAVPDIAVERAPHPGVVYRDLPDIPDSPLFLGWRSTPPPARSTRRYLDVALDTG GT:EXON 1|1-281:0| BL:SWS:NREP 1 BL:SWS:REP 1->186|YNFL_ECOLI|3e-14|33.7|181/297| SEG 261->272|rstppparstrr| BL:PDB:NREP 1 BL:PDB:REP 1->84|3hhgG|6e-10|33.3|84/294| RP:PDB:NREP 2 RP:PDB:REP 1->111|1b9nA|1e-17|13.6|110/258| RP:PDB:REP 87->242|3e4rA|2e-08|13.5|156/291| RP:PFM:NREP 1 RP:PFM:REP 5->63|PF00126|4e-08|45.8|59/60|HTH_1| HM:PFM:NREP 2 HM:PFM:REP 101->277|PF03466|5.9e-25|26.3|175/209|LysR_substrate| HM:PFM:REP 6->63|PF00126|2e-23|50.0|58/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->106|1b9mA1|7e-19|15.1|106/122|a.4.5.8| RP:SCP:REP 82->250|1i69A|5e-13|23.9|163/206|c.94.1.1| HM:SCP:REP 3->109|1b9mA1|6.2e-22|32.4|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 82->280|1al3A_|2.4e-19|26.0|196/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 1675 OP:NHOMOORG 431 OP:PATTERN -------------------------------------------------------------------- 13--4--22221-1421----1---B------211168EC-426----1----222-2--1-1-32E4971-111-----131-----------------------------------------------------24411---211--3--1---------11--2-----1-----1----111-----2-2-----11---1-241--223---111-112-------22------------------------11-----331111--1--1112-11----11111111111111---------------1111111-----1-----------------------21-----------11----------211-------1623--42213222222222226--1311334-63-88853479D6964A12131641462343233333314311----------------------------------551-3IDCFIHGIML79998IILGBBBB79IBLDHFD--CA543664J583B4342----42---------1231--------111112-1-1112-1-112133---------------------------4422121-3-1-133323--244423233252---12-2------33312323332322233-33333223233233333327972322-4243444444434334822233321---------------------------2159---------------2232323-21B1779888CC8BAB93867----------1--3222222212242355641111------------------------------------------------------------21 -------------1------------------------------------------------------------------------------------------------------------------------------------------------5-----------------------------3---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 260 STR:RPRED 92.5 SQ:SECSTR EEEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccTTccEEEEEEEcccccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGGGcTTccTcEEEEEEcGGGcEEEcccEEEEETTHHHHHHHTTcEEEEccTcccEEEEEEE##################### PSIPRED ccccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEcccccccccEEEEEEEcccEEEEEcccccccccccccHHHHccccEEEEcccccHHHHHHHccccccEEEEEccHHHHHHHHHccccEEEcHHHHHHHHHcccEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHc //