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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56812.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  32/68 : Bacteria  806/915 : Eukaryota  188/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:268 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   76->198 2q2qF PDBj 9e-18 38.2 %
:RPS:PDB   76->204 3ce6B PDBj 1e-23 10.1 %
:RPS:SCOP  77->234 1yb1A  c.2.1.2 * 1e-22 30.6 %
:HMM:SCOP  1->248 1zemA1 c.2.1.2 * 6.6e-59 37.0 %
:RPS:PFM   76->166 PF00106 * adh_short 1e-08 40.7 %
:HMM:PFM   8->167 PF00106 * adh_short 7.1e-33 32.7 156/167  
:BLT:SWISS 76->238 YQJQ_BACSU 5e-22 38.0 %
:PROS 136->164|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56812.1 GT:GENE BAD56812.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2140156..2140962) GB:FROM 2140156 GB:TO 2140962 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD56812.1 LENGTH 268 SQ:AASEQ MIELRGATVCVTGGARGIGRATAEALVARGARVWIGDRDEAEAARTAAAIGAHAHPLDVTEEASFRAFLAAAGADGPIDMLVNNAGVMRLGGFADQDLRALHGELDVNLGAVVTGMHLVLPGMLLRRRGHIVNVASMAGRITTPGIATYCASKFGVVALSRAVRAEIAGSGVTVTTVLPAATRTELTSGVMLRLQPTLEPRQVAAAIVGSARRGDGEITVPRWLAPVTLAEELLPAPVLGWLKRVVGGSRYGAYDAGERAAYLERIGL GT:EXON 1|1-268:0| BL:SWS:NREP 1 BL:SWS:REP 76->238|YQJQ_BACSU|5e-22|38.0|163/259| PROS 136->164|PS00061|ADH_SHORT|PDOC00060| SEG 12->25|tggargigrataea| SEG 36->55|gdrdeaeaartaaaigahah| SEG 63->74|asfraflaaaga| BL:PDB:NREP 1 BL:PDB:REP 76->198|2q2qF|9e-18|38.2|123/238| RP:PDB:NREP 1 RP:PDB:REP 76->204|3ce6B|1e-23|10.1|129/485| RP:PFM:NREP 1 RP:PFM:REP 76->166|PF00106|1e-08|40.7|91/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 8->167|PF00106|7.1e-33|32.7|156/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 77->234|1yb1A|1e-22|30.6|157/243|c.2.1.2| HM:SCP:REP 1->248|1zemA1|6.6e-59|37.0|246/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 5994 OP:NHOMOORG 1026 OP:PATTERN --1---223333322112------53343223--------------12--411--1----1-1-1-32 79D2J113226452MPLEE-EJ55LbEEEEEHTRRRDOgX2B7XB7422652587418--99E2D4GFH78-111---1261B--1--2233-122---44A273V7C461111111---1111231247333453BCC7A11172E9AB33465331211222336B9J6--11-----1--7755511143833333343734333352553733343356734343536F122222212222222322373-313413---791132532-44433434223222133333333333444444444444432211122231221522222222223233123333---261-12211211412111-421625K66711111B5HDH3337A77733423344447-9A687G8AGK91NEE9IENOPGRNCN485988E6CB97755555555D8845995--------------11-----1--1----47JI746DC9DPLMONKA99A8GGKK9AA95AWESDPKH25AAC76788EBG8GA4681335341111111225EA35B292112--122214453532426965HJ1211211111111-11--11-12-11133645356654323112216432212232126--2223411-111249B4634443444444-4344434434434444443686952324233333333323233A3333334112555555555541-1421212555518A761114231111121229989A69343A3FFAC88CGE99EBCA9822222222212226555554334556887875553-1-1123443333--------1-1----2-1-2--------2--------22111312125- 11--C48-1-1-57247359889979B3335442321544344212547656G48852111223522221222331212231111111-45471621111123433-8E6iNNABID86859D6NJ7G7KpF-GBIC875G99GD7BA45F46A8HIFJ6A99M9HAAGMH57MM14427---4A8AEF37548C4675 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 266 STR:RPRED 99.3 SQ:SECSTR ccTTTTcEEEEccTTcHHHHHHHHHHHHTTcEEEEEEccHHHHGGGGGcTTEEEEEEEcccHHHHHHHHHHHHHcccTTcEEEEccccGGGccHHHHHHTTcEEEEEETTEEEEEcTTTccEEEEEGGGccHHHHHcccccHHHHHHcGGGccccEEEccHHHHHHHHHHHHHHHTcccccccHHHHHHHTccTTcccccTTccHHHHHHTTccEEEEcccccHHHHHEEEEEEEHHHHccccccTTccccTTccHHHHEHHHHHH## DISOP:02AL 1-2| PSIPRED cccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHHcccEEEEEcccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcc //