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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56822.1
DDBJ      :             putative multi-drug efflux transporter
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  239/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
f.39.1
:107 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->83 1s7bB PDBj 7e-12 39.2 %
:HMM:SCOP  4->109 1s7bA_ f.39.1.1 * 4.7e-14 40.0 %
:RPS:PFM   4->64 PF00893 * Multi_Drug_Res 1e-08 58.3 %
:HMM:PFM   1->94 PF00893 * Multi_Drug_Res 2.8e-28 46.2 93/93  
:HMM:PFM   88->101 PF03729 * DUF308 0.00092 50.0 14/26  
:BLT:SWISS 4->64 QACE_KLEAE 1e-15 61.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56822.1 GT:GENE BAD56822.1 GT:PRODUCT putative multi-drug efflux transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2146784..2147107 GB:FROM 2146784 GB:TO 2147107 GB:DIRECTION + GB:PRODUCT putative multi-drug efflux transporter GB:PROTEIN_ID BAD56822.1 LENGTH 107 SQ:AASEQ MTLLLLALAIASEVTATVSLKLSEGFTKLTPSIVVVVGYCAAFYFLSQALKRGMAIGVAYGIWSAVGVAAIALIGVLFLNERLTLVQVGGIGLVILGVLALELGGAH GT:EXON 1|1-107:0| BL:SWS:NREP 1 BL:SWS:REP 4->64|QACE_KLEAE|1e-15|61.7|60/110| TM:NTM 4 TM:REGION 1->23| TM:REGION 27->49| TM:REGION 55->77| TM:REGION 83->104| SEG 65->77|avgvaaialigvl| SEG 85->106|lvqvggiglvilgvlalelgga| BL:PDB:NREP 1 BL:PDB:REP 4->83|1s7bB|7e-12|39.2|79/107| RP:PFM:NREP 1 RP:PFM:REP 4->64|PF00893|1e-08|58.3|60/93|Multi_Drug_Res| HM:PFM:NREP 2 HM:PFM:REP 1->94|PF00893|2.8e-28|46.2|93/93|Multi_Drug_Res| HM:PFM:REP 88->101|PF03729|0.00092|50.0|14/26|DUF308| GO:PFM:NREP 1 GO:PFM GO:0016021|"GO:integral to membrane"|PF00893|IPR000390| HM:SCP:REP 4->109|1s7bA_|4.7e-14|40.0|105/106|f.39.1.1|1/1|Multidrug resistance efflux transporter EmrE| OP:NHOMO 266 OP:NHOMOORG 243 OP:PATTERN ------------------------1--1----------------------1----------------- ---------------1111-11111111111121111-----1---1--1------------1-112---1-----------1------------------1------------------------1-----1---11111----------------------------1----------------11---1-111111-1---11--1-1---11----11-------------------------------1-------------------------------------------------------------------------1------------11-------------------------------1------------------11----11111111111--------1----1---11-111-111----1-1111--1------------1-11--------------------------------1--1111111111111111111-1111111111-1--------1111-------1-2--1-------------1-1--------1---------1--1----1----------------------------11-1--1---211------2------11--21---1----------1111-11111111211-2-12--1--221111111-1--2111211111211211111131---11111111111111111111---1-------11--1-------------1-11215------1---------------------------111------2----11----------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 79 STR:RPRED 73.8 SQ:SECSTR ###HHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHTcc#ccccccccHHHHHHHHHHHHHTTTTTcccc######################## DISOP:02AL 105-107| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccc //