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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56825.1
DDBJ      :             putative isopentenyldiphosphate isomerase
Swiss-Prot:IDI_NOCFA    RecName: Full=Isopentenyl-diphosphate Delta-isomerase;         Short=IPP isomerase;         EC=5.3.3.2;AltName: Full=Isopentenyl pyrophosphate isomerase;AltName: Full=IPP:DMAPP isomerase;

Homologs  Archaea  7/68 : Bacteria  145/915 : Eukaryota  152/199 : Viruses  0/175   --->[See Alignment]
d.113.1
:175 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->173 1nfsB PDBj 5e-16 32.4 %
:RPS:PDB   3->163 2dhoA PDBj 1e-13 31.7 %
:RPS:SCOP  3->153 2o5fA1  d.113.1.2 * 8e-22 20.0 %
:HMM:SCOP  1->175 1hx3A_ d.113.1.2 * 7.2e-40 39.4 %
:HMM:PFM   29->158 PF00293 * NUDIX 2.3e-25 31.0 126/135  
:BLT:SWISS 1->175 IDI_NOCFA 8e-92 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56825.1 GT:GENE BAD56825.1 GT:PRODUCT putative isopentenyldiphosphate isomerase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2149066..2149593) GB:FROM 2149066 GB:TO 2149593 GB:DIRECTION - GB:PRODUCT putative isopentenyldiphosphate isomerase GB:PROTEIN_ID BAD56825.1 LENGTH 175 SQ:AASEQ MPVELVDEAGRAVGACPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLWANTCCGHPAPGESVEAAAATRLAEELGVAAGLTEVGVFRYRAADTATGRVEHEWDHVLIGTLDTTPHPDPAEVANLRWVRPAEVRAKLAAEPAAYTPWLAEVLEIADAAYRESAGR GT:EXON 1|1-175:0| SW:ID IDI_NOCFA SW:DE RecName: Full=Isopentenyl-diphosphate Delta-isomerase; Short=IPP isomerase; EC=5.3.3.2;AltName: Full=Isopentenyl pyrophosphate isomerase;AltName: Full=IPP:DMAPP isomerase; SW:GN Name=idi; OrderedLocusNames=NFA_19790; SW:KW Complete proteome; Cytoplasm; Isomerase; Isoprene biosynthesis;Magnesium; Manganese; Metal-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->175|IDI_NOCFA|8e-92|100.0|175/175| GO:SWS:NREP 4 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0008299|"GO:isoprenoid biosynthetic process"|Isoprene biosynthesis| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| SEG 71->84|esveaaaatrlaee| BL:PDB:NREP 1 BL:PDB:REP 3->173|1nfsB|5e-16|32.4|170/180| RP:PDB:NREP 1 RP:PDB:REP 3->163|2dhoA|1e-13|31.7|161/215| HM:PFM:NREP 1 HM:PFM:REP 29->158|PF00293|2.3e-25|31.0|126/135|NUDIX| RP:SCP:NREP 1 RP:SCP:REP 3->153|2o5fA1|8e-22|20.0|140/155|d.113.1.2| HM:SCP:REP 1->175|1hx3A_|7.2e-40|39.4|175/0|d.113.1.2|1/1|Nudix| OP:NHOMO 352 OP:NHOMOORG 304 OP:PATTERN ------------------------1--1-111----------------------------------11 ----1111111------11-11--1-11111-1---1-1--111111111111--11---21-1111111-----------1-----------------11111111111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------1--------------------11-1111--1--------------1----------------------------------------------------11--------------------------------------------------2---------1--------------------------------------------------------------------------------------1-------1---1111111111111-111111111211111111111111221111111111111111111111111------------------11111----------------------------------1-----------------------------111---------------------------------------------------------------------------------1- ------1----111-11111111111111111111111111111111-1111111-1-111111111111111111111111111111-12211111-11111112-1112131111--1-1--13-11271-121------11----1----1-1111---111--21--11111111K11-1112411212111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 172 STR:RPRED 98.3 SQ:SECSTR #HEEEEcTTccEEEEEEHHHHTcTTTccEEEEEEEEEcTTccEEEEEEcTTccccTTcEEccEEEcccGGHHHHHHHHHHHHHHHcccGGGccGEEEEEEEEEcccccEEEEEEEEEEEEccccccccTTTEEEEEEEcHHHHHHHHHTTcccccHHHHHHHHHHHHHHHHHH## DISOP:02AL 173-175| PSIPRED cEEEEEcccccEEccccHHHHHcccccEEEEEEEEEEEcccEEEEEEEccccccccccEEEcccccccccccHHHHHHHHHHHHHccccccEEEEEEEEEEEccccccEEEEEEEEEEEEEcccccccHHHHHHEEcccHHHHHHHHHccccEEcccHHHHHHHHHHHHHHHccc //