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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56828.1
DDBJ      :             putative lipopolysaccharide biosynthesis protein
Swiss-Prot:             

Homologs  Archaea  36/68 : Bacteria  617/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:379 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->374 2ogaC PDBj 2e-35 38.3 %
:RPS:PDB   4->379 3dr4C PDBj 3e-38 27.7 %
:RPS:SCOP  16->374 1o61A  c.67.1.4 * 6e-65 19.8 %
:HMM:SCOP  4->377 2fnuA1 c.67.1.4 * 7e-84 35.9 %
:RPS:PFM   11->374 PF01041 * DegT_DnrJ_EryC1 1e-52 37.6 %
:HMM:PFM   15->374 PF01041 * DegT_DnrJ_EryC1 3.9e-91 36.0 353/363  
:BLT:SWISS 8->371 RFFA_ECOLI 5e-67 40.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56828.1 GT:GENE BAD56828.1 GT:PRODUCT putative lipopolysaccharide biosynthesis protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2153496..2154635) GB:FROM 2153496 GB:TO 2154635 GB:DIRECTION - GB:PRODUCT putative lipopolysaccharide biosynthesis protein GB:PROTEIN_ID BAD56828.1 LENGTH 379 SQ:AASEQ MSTDRVIFSRPYRARRELANLAAVLASDHSHGDGPFTASATAKLQAITEAPHALLTTSCTSALEMAGLLLELGPEDEVIVPSFAFTSTATSMALRGATCVFADIDPATGNLDPESVAAAIGPRTKAVVVIHYGGVAADMAGLLELAATHGFAIVEDNAHGLGGRWRGRPLGTIGTLGTLSFHDTKNVHCGEGGALLLTDDILMGRAEIIREKGTDRARFLRGAVDKYSWQDIGSSYLPSELNAAVLDAQLDEFDRIQAGRHRVWNAYAAGLPDWAARNDVRLMSVPADREHTAHLFYLRTPTEQRRDDLIAHLAARGISAPFHYVPLDSSPAGLKLGRTPYPCVRSAEFSGTVVRLPLWPDLADAQVERVIEAVTAFTV GT:EXON 1|1-379:0| BL:SWS:NREP 1 BL:SWS:REP 8->371|RFFA_ECOLI|5e-67|40.4|364/376| SEG 62->73|alemaglllelg| SEG 160->171|glggrwrgrplg| BL:PDB:NREP 1 BL:PDB:REP 34->374|2ogaC|2e-35|38.3|326/369| RP:PDB:NREP 1 RP:PDB:REP 4->379|3dr4C|3e-38|27.7|365/368| RP:PFM:NREP 1 RP:PFM:REP 11->374|PF01041|1e-52|37.6|354/358|DegT_DnrJ_EryC1| HM:PFM:NREP 1 HM:PFM:REP 15->374|PF01041|3.9e-91|36.0|353/363|DegT_DnrJ_EryC1| RP:SCP:NREP 1 RP:SCP:REP 16->374|1o61A|6e-65|19.8|344/374|c.67.1.4| HM:SCP:REP 4->377|2fnuA1|7e-84|35.9|362/0|c.67.1.4|1/1|PLP-dependent transferases| OP:NHOMO 1547 OP:NHOMOORG 668 OP:PATTERN -----1--1-------1311111----2-1--222-1211--112-1414-11111-1-12---1-12 266-5---------1--11-1---2-2-222-----22112334-41-----223-----62316352-5---------231-113418432-711---43345334717--------------13233212344145575---2-4331334122222121213213363421122222111---1-222--3--1-111--1-1-2---3343-1211-1211------22---------------1--1-------------1-----1-----------------11111111111-----------------------111253334444533--223-1--24-2-1213323343-1-1--21---211433211111115424322112322222222221-11221415321-----3425353133122112-1221311111111121112912-----------------------------13-1--333233223222222211234444242243233124326223--313211241-115311111111-2-213315324335654348349527531222-2524542-221222131111111431342241-112213113212251222222222132---1211------23232322332222222-32222222323223323322225675232333333332333322211222321233333323333--1-44444222231--31112-21----2--1-1111-11311-212125521--2122222111111112211111111-1--2--23333223------72445568--------211-------------------------2223322222151 -------------1--------1212-------111--------------1---------------------------------------------------------2------------------------------------------------------2-1------------2F--2---------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 379 STR:RPRED 100.0 SQ:SECSTR cTccccccccccccccHHHHHHHHHHHTcccccccHHHHHHHHHHHHHTccEEEEEccHHHHHHHHHHHTTccTTcEEEEEccccTHHHHHHHHTTcEEEEEcccTTTccccHHHHGGGccTTEEEEccccGGGccccHHHHHHHHHHTTcEEEEEcTTcTTcEETTEETTccccEEEEEccTTccccccccEEEEEccHHHHHHHHHHHcTTccTTcTccccccTTccccccccccccHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHGGGGGGGEEEEcccccTTcccccccEEEEEcccccHHHHHHHHHHTTcccEEccccGGGcGGGGGGcccccHcHHHHHHHHHEEEEcccTTccHHHHHHHHHHHHHHcc DISOP:02AL 1-3| PSIPRED ccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHcccEEEEEccHHHccccccEEEcccccEEEEEEcccEEcccccccEEEEccHHHHHHHHHHHHcccccccHHcccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHcccEEEEEEEccccccHHHHccccccccHHHHHHHHcEEEccccccccHHHHHHHHHHHHHHcc //