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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56847.1
DDBJ      :             putative dehydrogenase
Swiss-Prot:             

Homologs  Archaea  41/68 : Bacteria  672/915 : Eukaryota  171/199 : Viruses  0/175   --->[See Alignment]
b.35.1c.2.1
:395 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->393 2dphA PDBj 4e-40 36.8 %
:RPS:PDB   1->392 2b83A PDBj 3e-43 26.7 %
:RPS:SCOP  1->154 1bxzA1  b.35.1.2 * 3e-29 31.0 %
:RPS:SCOP  158->350 1kolA2  c.2.1.1 * 2e-22 29.5 %
:HMM:SCOP  1->203 1kolA1 b.35.1.2 * 6.7e-60 45.9 %
:HMM:SCOP  154->355 1kolA2 c.2.1.1 * 7.1e-41 45.1 %
:RPS:PFM   27->139 PF08240 * ADH_N 2e-11 40.4 %
:RPS:PFM   190->334 PF00107 * ADH_zinc_N 3e-08 40.4 %
:HMM:PFM   26->141 PF08240 * ADH_N 1.8e-30 44.6 101/109  
:HMM:PFM   189->258 PF00107 * ADH_zinc_N 2.7e-13 36.8 68/130  
:HMM:PFM   273->352 PF00107 * ADH_zinc_N 3.9e-06 21.8 78/130  
:BLT:SWISS 1->393 FADH_METMR 9e-86 46.3 %
:PROS 59->73|PS00059|ADH_ZINC

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56847.1 GT:GENE BAD56847.1 GT:PRODUCT putative dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2176877..2178064 GB:FROM 2176877 GB:TO 2178064 GB:DIRECTION + GB:PRODUCT putative dehydrogenase GB:PROTEIN_ID BAD56847.1 LENGTH 395 SQ:AASEQ MKAVTWQGRRKIAVDEVPDPRIQQPTDAIVRITSTAVCGSDLHLYEVLGPYMTPGDVLGHEPMGIVEEVGAQVRDLKPGDRVVVPFQISCGHCAMCDTGLPTQCETTQVRSQGSGAALFGYSELYGQVPGGQAEYLRVPYADHTHITVPEGPDDQRFLYLSDVLPTAWQAVEYAAVPDGGSVTVLGLGPIGDMACRVAAHRGYRVIGVDRVPERLSRVAARGIEVIDFSAVDADLGDVIRDRTDGRGTDAVIDAVGMEAHGSPIGSVAHRSAALLPDVVARKVMDTAGVDRLAALHEAIDIVRRGGTISLVGVYGGMVDPLPMRVLFDKQIQLRMGQANVTRWAPEILPLLTDDDPLGVDTFATHRLPLSKAPAAYEMFQQKADGAVKIVLDPAA GT:EXON 1|1-395:0| BL:SWS:NREP 1 BL:SWS:REP 1->393|FADH_METMR|9e-86|46.3|380/390| PROS 59->73|PS00059|ADH_ZINC|PDOC00058| BL:PDB:NREP 1 BL:PDB:REP 2->393|2dphA|4e-40|36.8|361/398| RP:PDB:NREP 1 RP:PDB:REP 1->392|2b83A|3e-43|26.7|345/351| RP:PFM:NREP 2 RP:PFM:REP 27->139|PF08240|2e-11|40.4|99/108|ADH_N| RP:PFM:REP 190->334|PF00107|3e-08|40.4|109/128|ADH_zinc_N| HM:PFM:NREP 3 HM:PFM:REP 26->141|PF08240|1.8e-30|44.6|101/109|ADH_N| HM:PFM:REP 189->258|PF00107|2.7e-13|36.8|68/130|ADH_zinc_N| HM:PFM:REP 273->352|PF00107|3.9e-06|21.8|78/130|ADH_zinc_N| GO:PFM:NREP 4 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF08240|IPR013154| GO:PFM GO:0008270|"GO:zinc ion binding"|PF00107|IPR013149| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00107|IPR013149| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00107|IPR013149| RP:SCP:NREP 2 RP:SCP:REP 1->154|1bxzA1|3e-29|31.0|142/178|b.35.1.2| RP:SCP:REP 158->350|1kolA2|2e-22|29.5|173/195|c.2.1.1| HM:SCP:REP 1->203|1kolA1|6.7e-60|45.9|194/0|b.35.1.2|1/1|GroES-like| HM:SCP:REP 154->355|1kolA2|7.1e-41|45.1|182/0|c.2.1.1|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 3590 OP:NHOMOORG 884 OP:PATTERN 221-1-24666668861422-31-9112336211----------31----231---12-11-----23 36C152123341-117555-5D116I444444BDEEABHA2645955412-1A7B54211347463FAA9411111311---A-1--11122-1-----2-2-1-61422---------------------1----25532---274327221------------24868-------------44322321717333333452443334B55545333231342211111-32233333333333333323341-5--2-7--13344212122332223231222311333333333332221222221222322111222221-13221222331173--1-----21-1-1--11212122-22222--35254333-----549792-23212322222221116-74337344245-9AA4ABA8BA6C551416254256423222222222334--2-------------------------------28512-22129AA9AA8656589AD88881698A4865--118242434421561-1-2-13-21211212133-1111---1---1----333-1-121326557222----1111----------------111111334153-2111121-21111111111---22--------36431338569899978-58878887785878888854533433186A597B87B96865754234435--133332333333---2111113222-12861112-2-111--22-11222-311-6164762633446453334111111111--111-----11---22544443323111--13111123--------1--------31--1---1---11-----1311-11222141 ------2--1---14CHEDFHJCPMOH8867673537756554556DAACGHRTACB79655239-41322-4363422223331553-9ECH5A3B655328534-3218563771211-141431A-7Q7-858311-3214232--112231A129232-33-141332131225--1--2385AJECA318538- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 395 STR:RPRED 100.0 SQ:SECSTR cEEEEEEETTEEEEEEccccccccTTcEEEEEEEEcccHHHHHHHHTcTTcccccEEccccEEEEEEEEcTTcccccTTcEEEEcccccccccHHHHTTcGGGTTcTTTTcccTTTccccccccEEEEcccccccEEEccHHHHcEEccTTccHHHHHTTTTHHHHHHHHHHHTTccTTccEEEEcccHHHHHHHHHHTTTcccEEEEcccHHHHHHHHHHTccEEcEcGGGccHHHHHHHHTTTccEEEEEEccccTTHHHTGcHHHHHHHHHHcEEEEEEEEEcccTTHHTHHHHHHHHEEEEEEEEEcccccTTccccccTTTTGcccEEEEcccccHHHHHHHHHHHHHTTcccGGGGEEEEEcGGGHHHHHHHHHHccTTccEEEEEcTc DISOP:02AL 395-396| PSIPRED cEEEEEEccccEEEEEEcccccccccEEEEEEEEEEEEcccEEEEEcccccccccEEccccccEEEEEEcccccccccccEEEEcccccccccHHHccccccccccccccccccccccccccccccccccHHHcEEEEcHHHHcEEEccccccHHHHHHHcccHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccEEEEccccccHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHccEEEEEEEEcccHHHHHHHHHHHHccccccHHHEEEEEEHHHHHHHHHHHHcccccEEEEEEEEcc //