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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56849.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  65/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.100.1
:404 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   189->265 3cq9D PDBj 8e-08 24.2 %
:RPS:SCOP  186->278 1ig0A2  c.100.1.1 * 2e-10 17.8 %
:HMM:SCOP  162->347 1ig0A2 c.100.1.1 * 3.2e-17 30.1 %
:RPS:PFM   341->392 PF12555 * TPPK_C 7e-04 34.6 %
:HMM:PFM   341->392 PF12555 * TPPK_C 1.4e-21 53.8 52/53  
:HMM:PFM   184->245 PF01973 * MAF_flag10 1.7e-05 28.3 60/170  
:BLT:SWISS 148->230 PGK_SINMW 3e-04 35.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56849.1 GT:GENE BAD56849.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2179346..2180560 GB:FROM 2179346 GB:TO 2180560 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56849.1 LENGTH 404 SQ:AASEQ MKLPALLSKNTETLPGRTGIARVDRNTRRLLRRVGPGDIAVVDEMDLDRITADRLVEAGVVAVVNTSPSISGRYPNLGPEVLVANDIMLVDTVSSDAFTKIKDGSKIRIHDGVVYADKLTKKEPEALVEGIELTEAAIAERMIEARNGLADHLEAFAGNTIEFVRTESALLIDGIGVPELELDMKQRHVVVVADGPDHAEDLKRLKPFIKEYAPIMVGVGRGADTLRKQGYRPDLIVGDPEEITSATMKCGAEVILPADTDGHAKGLERIQDLGIGATTFPSSGAPADLALLLAEHHGAALIVTVGAAASLDDFFDRGRRDSNPATFLTRLKVGTKLMDAKAVATLYRNRMSGVALAMVVLAALIAVIVVLLASNTGTEVLDWAVDTWNRFARWCQDLVGAGQR GT:EXON 1|1-404:0| BL:SWS:NREP 1 BL:SWS:REP 148->230|PGK_SINMW|3e-04|35.6|73/399| TM:NTM 1 TM:REGION 353->375| SEG 22->34|rvdrntrrllrrv| SEG 135->146|eaaiaermiear| SEG 281->301|pssgapadlalllaehhgaal| SEG 354->373|valamvvlaaliavivvlla| RP:PDB:NREP 1 RP:PDB:REP 189->265|3cq9D|8e-08|24.2|66/199| RP:PFM:NREP 1 RP:PFM:REP 341->392|PF12555|7e-04|34.6|52/53|TPPK_C| HM:PFM:NREP 2 HM:PFM:REP 341->392|PF12555|1.4e-21|53.8|52/53|TPPK_C| HM:PFM:REP 184->245|PF01973|1.7e-05|28.3|60/170|MAF_flag10| RP:SCP:NREP 1 RP:SCP:REP 186->278|1ig0A2|2e-10|17.8|90/221|c.100.1.1| HM:SCP:REP 162->347|1ig0A2|3.2e-17|30.1|176/221|c.100.1.1|1/1|Thiamin pyrophosphokinase, catalytic domain| OP:NHOMO 66 OP:NHOMOORG 65 OP:PATTERN -------------------------------------------------------------------- ----111111111111111-111111111111111111111---111-1-----------111-111---2-----------1-------------------------------------------------------------------------------------------------------------------------------1--------------------1-------------------------------------------------------------------------------------------111-------------1---------------1--11-1111-1111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 71 STR:RPRED 17.6 SQ:SECSTR ############################################################################################################################################################################################EEEEcccc#####GGGccccGGGccccEEEETHHHHHHHHTTc#cccEEccccTTTTHHHHTTTcEEEcccccccHH########################################################################################################################################### DISOP:02AL 1-3, 5-7, 403-404| PSIPRED ccccHHHHccccccccEEEEEEccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEcccccccccccccHHHHHHccEEEEEcccHHHHHHHccccEEEEEccEEEEccccccccEEEEccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHccccccEEEEccccccHHHHHcccEEEEEcccccccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHcccccccHHHHHHHHHccEEEcHHHHHHHHcccccHHHHHHHHHHHHHHHHHEEEccccccEEHHHHHHHHHHHHHHHHHHHccccc //