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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56856.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  516/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:225 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   20->174 2z99A PDBj 9e-54 66.5 %
:RPS:SCOP  28->99 1t6sA1  a.4.5.60 * 2e-11 22.2 %
:RPS:SCOP  103->172 1t6sA2  a.4.5.60 * 2e-05 42.9 %
:HMM:SCOP  18->100 1t6sA1 a.4.5.60 * 1.7e-17 36.1 %
:HMM:SCOP  101->176 1t6sA2 a.4.5.60 * 2.1e-19 55.3 %
:RPS:PFM   27->172 PF04079 * DUF387 7e-30 48.6 %
:HMM:PFM   28->185 PF04079 * DUF387 7.7e-52 44.6 157/159  
:BLT:SWISS 18->172 SCPB_MOOTA 1e-25 41.6 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56856.1 GT:GENE BAD56856.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2187030..2187707 GB:FROM 2187030 GB:TO 2187707 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56856.1 LENGTH 225 SQ:AASEQ MSQPPNTAADVVSDLTPPVLDDAEFRSALEAMLLVVDAPAPVEQLAAALDDTTERVEATLRQMSAELTARGSGIDLRFVGDGWRFYTRTEYAPYVERVLLDGARTKLTRAALETLAVVAYRQPVTRNRVSAVRGVNVDGVMRTLLARGLIAEAGVDPETNGTLYRTTELFLERIGLASLSDLPPLAPLLPGVDLIDEINDSLETDPRYTRLRKPAESDLDLGTED GT:EXON 1|1-225:0| BL:SWS:NREP 1 BL:SWS:REP 18->172|SCPB_MOOTA|1e-25|41.6|154/195| COIL:NAA 28 COIL:NSEG 1 COIL:REGION 42->69| SEG 175->194|glaslsdlpplapllpgvdl| BL:PDB:NREP 1 BL:PDB:REP 20->174|2z99A|9e-54|66.5|155/160| RP:PFM:NREP 1 RP:PFM:REP 27->172|PF04079|7e-30|48.6|146/160|DUF387| HM:PFM:NREP 1 HM:PFM:REP 28->185|PF04079|7.7e-52|44.6|157/159|DUF387| RP:SCP:NREP 2 RP:SCP:REP 28->99|1t6sA1|2e-11|22.2|72/85|a.4.5.60| RP:SCP:REP 103->172|1t6sA2|2e-05|42.9|70/77|a.4.5.60| HM:SCP:REP 18->100|1t6sA1|1.7e-17|36.1|83/0|a.4.5.60|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 101->176|1t6sA2|2.1e-19|55.3|76/0|a.4.5.60|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 521 OP:NHOMOORG 520 OP:PATTERN ------------------------------------------------------111---1------- 111-111111111111111-11111111111111111111111111-111111111-1--111-1111111----11111111----------------------11-1---------------111111111-1111111---11----------------------------------------111111111111111111111111111111111111111111111111111111-111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11-1-111111111---1111--1-----11-11--11-11-111-111111----------111--------------111-11111111--11111111111-111-------------------------------1--1-1111111111111111111111111111111111111111111111111111111111-------11111111-1-----------11111-111111111-----------------------------11-111-111-1111111111111111111---1111--------------------------------------------------------------------------------------------11111111111111----------------1111111-111111111111111111111-------------------------1111111111111----111111--------11-------11-111-1111--111--------111-1-1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 155 STR:RPRED 68.9 SQ:SECSTR ###################ccHHHHHHHHHHHHHHccccccHHHHHHHHTccHHHHHHHHHHHHHHHHHTTccEEEEEETTEEEEEEcGGGHHHHHHHHHHHHcccccHHHHHHHHHHHHHccEEHHHHHHHHTcccHHHHHHHHHTTcEEEEEEcTTTccEEEEEcHHHHHHH################################################### DISOP:02AL 1-6, 205-225| PSIPRED cccccccHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHcccEEEcccccccccccccccHHHHHHcccccHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccc //