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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56863.1
DDBJ      :             putative peptidase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  459/915 : Eukaryota  189/199 : Viruses  0/175   --->[See Alignment]
d.92.1
:679 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->677 1y791 PDBj e-142 42.8 %
:RPS:PDB   90->676 2c6fB PDBj 2e-59 11.0 %
:RPS:SCOP  8->676 1i1iP  d.92.1.5 * e-128 22.3 %
:HMM:SCOP  1->676 1i1iP_ d.92.1.5 * 1.9e-166 38.7 %
:RPS:PFM   231->671 PF01432 * Peptidase_M3 3e-57 39.4 %
:HMM:PFM   226->674 PF01432 * Peptidase_M3 3.1e-117 36.4 445/458  
:BLT:SWISS 2->678 DCP_SALTY e-148 43.1 %
:PROS 462->471|PS00142|ZINC_PROTEASE
:PROS 49->65|PS00237|G_PROTEIN_RECEP_F1_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56863.1 GT:GENE BAD56863.1 GT:PRODUCT putative peptidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2195773..2197812) GB:FROM 2195773 GB:TO 2197812 GB:DIRECTION - GB:PRODUCT putative peptidase GB:PROTEIN_ID BAD56863.1 LENGTH 679 SQ:AASEQ MNPFFERSALPYELPPFARIREEHFLPAFERGMREQLAEVAAIAGDAQAPTFANTVVALERSGAVLRRVRAVFFALVSADSTPGIQAIEAEVSPRLAAHHDAIHLNAELFARIDALYERRAELGLDAQDLRLLEQYHLEFVRAGARLDAAGQARLRELNAELAAAATRFGQNLLAATNAATVLVEHERELAGLAPDAVAAAAEQARALGHEGWALRLQNVSNQPVLAELSDRELRRRVLDASLERGFGTDPDNAATAVRIAALRAERAALLGFPDHAGYVVADQTASTAEAVEEMFARLVPPAVANAEREAAELAAAMRAAGAGDELRAWDWLYWSERVRAERFAVDGAALRPYLELERVLWDGVFHAAERVYGITVRERADLTGYHPDVRVFEVFDADGSPLGLFLGDYFARPSKRGGAWMTALVDQSTLLGTRPVVTNVLNIARPPEGEPVLLTWDNVRTLFHEFGHALHGLCSDVRYPYFSGTAVPRDFVEFPSQVNEMWMDHPEILARYARHVETGAPMPPELVERLREAARFGEGFRTVEYLAAAQLDWAWHRVADPAALDGVDAAAFEEQALRKAGLALSAVPPRYRTAYFAHIFSGGYAAGYYSYIWSEVLDADTVEWFTDGAAPIRDKGEIFRRTLLARGGSVDPMAAFAQVRGREPDIGPLLARRGLSRT GT:EXON 1|1-679:0| BL:SWS:NREP 1 BL:SWS:REP 2->678|DCP_SALTY|e-148|43.1|675/680| PROS 462->471|PS00142|ZINC_PROTEASE|PDOC00129| PROS 49->65|PS00237|G_PROTEIN_RECEP_F1_1|PDOC00210| SEG 153->166|arlrelnaelaaaa| SEG 172->184|nllaatnaatvlv| SEG 191->207|aglapdavaaaaeqara| SEG 254->271|aatavriaalraeraall| SEG 303->323|avanaereaaelaaamraaga| SEG 602->612|sggyaagyysy| BL:PDB:NREP 1 BL:PDB:REP 1->677|1y791|e-142|42.8|675/680| RP:PDB:NREP 1 RP:PDB:REP 90->676|2c6fB|2e-59|11.0|555/611| RP:PFM:NREP 1 RP:PFM:REP 231->671|PF01432|3e-57|39.4|398/410|Peptidase_M3| HM:PFM:NREP 1 HM:PFM:REP 226->674|PF01432|3.1e-117|36.4|445/458|Peptidase_M3| GO:PFM:NREP 2 GO:PFM GO:0004222|"GO:metalloendopeptidase activity"|PF01432|IPR001567| GO:PFM GO:0006508|"GO:proteolysis"|PF01432|IPR001567| RP:SCP:NREP 1 RP:SCP:REP 8->676|1i1iP|e-128|22.3|650/665|d.92.1.5| HM:SCP:REP 1->676|1i1iP_|1.9e-166|38.7|653/0|d.92.1.5|1/1|Metalloproteases ("zincins"), catalytic domain| OP:NHOMO 1190 OP:NHOMOORG 650 OP:PATTERN -------------------------------------------11----------------------- 1-2-11111111-1----------------------1-------11--111--11-11----1--1-------------------1--2223-322---2222211----------------------------------------1111111--11111111111-1111111111111111111----2----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-111111-1111111111111111111111111-1111111111--111111111111---111111111111---------111--1-------------------------------1--1-111111111112111111112222121111111111111211111121111111113111111111111111-----1-----------------221242--1-------------------1--11--1112122232134444333444343343321-31111------22111222222222222-22222222222222222222221111122222222222222222222222211111111111111111211111111111111111111111111111222222111112111111211111111111111111111111111111111113333333244222211--111111-----------------------------------------------32 -1--223-C52-1125822-222344222122222222222222222225333312222212321421-22222322-2222222211-23282222221221333-33253233372132342552526N315471221432342332242363232324224332222511311112I2322333861473473332 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 678 STR:RPRED 99.9 SQ:SECSTR ccGGGcccccGGGcTTTcccHHHHHHHHTccccccccTTcGGGccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcccHHHHHHHHHHcccGGGGccHHHHHHHHHHHHHHHHHHTTccccccccccccccTTTHHHHHHHHcccHHHHHHHHHHHHHHHHTHHTTTHHHHHHHHHHHHHHHHTTTcccHHHHHHGGGccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTTTccTTccEETTccccTTccccGGGGGGTcccTTHHccccccTHHHHHTTTccHHHHcccHHHHHHHHHHTTcccccHHHHHHccccccccccccccccccccccccccccEEEEccccccEEEEccccccHHHHHHHHHHHHHHHHHHHcTTcccGGGcccccHHHHHHHHHHHHHHHHcHHHHHTcccccccccccHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTcccGGGTTHHHHHHHHHHTcEEccccccTTccGGGGcTTTTTTcccHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHTTTTTccHHHHHHHHTccccccHHHHHHHHHHH# DISOP:02AL 677-679| PSIPRED cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccHHHHccccHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHccEEEEcccccccccccEEEEEEcccccEEEEEEEEEccccccccccEEEEEcccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHcccccc //