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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56864.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  90/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
b.18.1
:693 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->175 3ibzA PDBj 4e-26 45.5 %
:RPS:PDB   1->174 2a5iA PDBj 4e-17 14.0 %
:RPS:SCOP  6->99 1wmdA1  b.18.1.20 * 2e-11 15.1 %
:RPS:PFM   54->167 PF02342 * TerD 1e-18 46.5 %
:HMM:PFM   53->167 PF02342 * TerD 2.3e-20 38.3 115/128  
:HMM:PFM   326->389 PF08774 * VRR_NUC 1.6e-06 32.1 53/97  
:BLT:SWISS 2->173 TERD_SERMA 1e-26 43.6 %
:BLT:SWISS 258->370 Y677_SERP5 4e-04 30.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56864.1 GT:GENE BAD56864.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2198006..2200087 GB:FROM 2198006 GB:TO 2200087 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56864.1 LENGTH 693 SQ:AASEQ MMSPMLSKGENVPLPDDVERVDVVLGWSESEVEVDASALLLGADGKVGDDADFVFYNQPESPDGSVCFLGASTTEEGAQARIALDLSAVSERVHRIALVGSVGAGTFGDLGKLALRVVDAAGMSLAEYVTADATTESAFVFGEVYRRHGIWKVRAVGQGWDTGLAGLATDFGVAIDDDGERAEAPEGSDGSIETSPAEPASGAREPQDTPRQESDARRSVEPPAEDAGPRSVDAVPVPEPAQRPAAARRGVRTTKRAPKKVKPLEFTLAEHDGWQPARLFSVVGVGAGEEQERRATSALISTMQAVKPFARAICARMGAPAGVFEGYVEVPYERGESKVVPDAVLKVVRGGRVWTGLLEVKTGNGRLRREQLENYLDVARRKKYDVVVSLSNDVPAGPGELPVDVDRRKLAKVALRHLSWSEVAHEARMLVAHGGIDNELQAWILAEFLRYLDHPRSGAAEFVDMGRHWVAVRDGVLAGTLRAGDQKALTVAETWSSLSRHLALRMTAELGVTVKHVLARKYRTDPAARNAAVAERLAAEGVFEAVLRIPDTAGDLVVVADLRTNRVRCRTTLDAPNEGTSGRRLSWLLRQLADAPGEVQVEAVFSEKGNEACEHLSTVRATPKVLTEGRAGTIVSFSLEQSFPMGSRRSGTAASFVASVTGAMDAFYGAVVQPLRGWVPAAPKQSDMVPAED GT:EXON 1|1-693:0| BL:SWS:NREP 2 BL:SWS:REP 2->173|TERD_SERMA|1e-26|43.6|172/192| BL:SWS:REP 258->370|Y677_SERP5|4e-04|30.9|110/100| SEG 234->252|avpvpepaqrpaaarrgvr| SEG 527->540|aarnaavaerlaae| BL:PDB:NREP 1 BL:PDB:REP 21->175|3ibzA|4e-26|45.5|154/176| RP:PDB:NREP 1 RP:PDB:REP 1->174|2a5iA|4e-17|14.0|157/306| RP:PFM:NREP 1 RP:PFM:REP 54->167|PF02342|1e-18|46.5|114/125|TerD| HM:PFM:NREP 2 HM:PFM:REP 53->167|PF02342|2.3e-20|38.3|115/128|TerD| HM:PFM:REP 326->389|PF08774|1.6e-06|32.1|53/97|VRR_NUC| GO:PFM:NREP 1 GO:PFM GO:0006950|"GO:response to stress"|PF02342|IPR003325| RP:SCP:NREP 1 RP:SCP:REP 6->99|1wmdA1|2e-11|15.1|93/116|b.18.1.20| OP:NHOMO 318 OP:NHOMOORG 92 OP:PATTERN -------------------------------------------------------------------- ------------------------------------8675-87831----------------1----ADB-----------------------------------3---1-------------------------------------2--22-----------1------4--------------4-------2333332222232223--2232222---2---------4----------------------------------------------2----------------------------------------------21------------5113----4----------63--------------------------------------------------------------------------------------------------------2-------------------------------------------------------------3-----------------4-----------------------5-----------------------------------------------------------------------6----------------------2----------4------36----4---3---------3---------44----3---------------------------33333333333------------------------------2--------4343----------------443------------------------------------------------------------------------------------------------- ----61------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 175 STR:RPRED 25.3 SQ:SECSTR TTcccccTTcEEEEEEEEEEEEccTTccccEEETTEEEEEEEEEEEEEEcTTcccccccccccccccccccccccHHHHHHHHHHHTTccTTcccccccHHHHHHccccHHHHHHTHHHHHTccHHHHHHHHHHHHHHHcHHHHHHHcTccTTcccTEEcTTTcccccccccHHc###################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################### DISOP:02AL 174-292, 644-653, 687-693| PSIPRED ccEEEEccccccccccccEEEEEEEccccccccEEEEEEEEccccccccccEEEEcccccccccEEEEEcccccccccccEEEEEEccccccccEEEEEEEEccccHHHccccEEEEEEccccEEEEEccccccccEEEEEEEEEEEcccEEEEEccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHcccEEEEEcccccccccccEEEEEEEccEEEEEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEcccccccccccEEEcccHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHHHcccccHHHHHHHHHHHHccEEEEEEEEccccccEEEEEEccccEEEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHccccHHHccccccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc //